# 2020/03/27 03:54:33
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243165	Replication ID
# SRP000547	Sample ID
# ERR243165_1.filt	Read1
# ERR243165_2.filt	Read2
R1	        1666832 (100.0000%)	[A] Total raw reads
R1	        1636349 (98.1712%)	[B] Total reads after QC of (A)
R1		
R1	        1636349 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3023732 (92.3926%)	[B-3] Total mapped reads of (B-2)x2
R1	         248966 (7.6074%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1521709 (92.9942%)	[F] Total mapped reads of (B-2)
R1	         114640 (7.0058%)	[G] Total unmapped reads of (B-2)
R1	          16031 (0.9797%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1620318 (99.0203%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           5676 (0.3469%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      3503.016	[I-3] RPMH of (I-1)
R1	      3468.698	[I-4] PPM of (I-1)
R1	    354064.001	[I-5] RPMU of (I-1)
R1	             11 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         6.789	[I-7] RPMH of (I-6)
R1	         6.722	[I-8] PPM of (I-6)
R1	       686.170	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1666832 (100.0000%)	[A] Total raw reads
R2	        1636349 (98.1712%)	[B] Total reads after QC of (A)
R2		
R2	        1636349 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3023732 (92.3926%)	[B-3] Total mapped reads of (B-2)x2
R2	         248966 (7.6074%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1502023 (91.7911%)	[F] Total mapped reads of (B-2)
R2	         134326 (8.2089%)	[G] Total unmapped reads of (B-2)
R2	          23972 (1.4650%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1612377 (98.5350%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           5594 (0.3419%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      3469.412	[I-3] RPMH of (I-1)
R2	      3418.586	[I-4] PPM of (I-1)
R2	    233355.582	[I-5] RPMU of (I-1)
R2	              8 (0.0005%)	[I-6] Total chimeric reads of (I-1)
R2	         4.962	[I-7] RPMH of (I-6)
R2	         4.889	[I-8] PPM of (I-6)
R2	       333.723	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
3502.3989	3468.0866	354001.6219	5675	0	5675	5675.000	565691	ALL_R1	viral	Lymphocryptovirus	0.0
<<
3467.5513	3416.7528	233230.4355	5591	0	5591	5591.000	557097	ALL_R2	viral	Lymphocryptovirus	0.0
<<
6.7888	6.7223	686.1705	11	0	11	11.000	1041	R1U	viral	Lymphocryptovirus	n/a	
<<
4.9616	4.8889	333.7227	8	0	8	8.000	796	R2U	viral	Lymphocryptovirus	n/a