# 2020/03/24 14:24:01
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243160	Replication ID
# SRP000547	Sample ID
# ERR243160_1.filt	Read1
# ERR243160_2.filt	Read2
R1	        1824796 (100.0000%)	[A] Total raw reads
R1	        1791865 (98.1954%)	[B] Total reads after QC of (A)
R1		
R1	        1791865 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        3318277 (92.5928%)	[B-3] Total mapped reads of (B-2)x2
R1	         265453 (7.4072%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1669549 (93.1738%)	[F] Total mapped reads of (B-2)
R1	         122316 (6.8262%)	[G] Total unmapped reads of (B-2)
R1	          20885 (1.1655%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1770980 (98.8345%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	           9401 (0.5246%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      5308.360	[I-3] RPMH of (I-1)
R1	      5246.489	[I-4] PPM of (I-1)
R1	    450131.673	[I-5] RPMU of (I-1)
R1	              8 (0.0004%)	[I-6] Total chimeric reads of (I-1)
R1	         4.517	[I-7] RPMH of (I-6)
R1	         4.465	[I-8] PPM of (I-6)
R1	       383.050	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1824796 (100.0000%)	[A] Total raw reads
R2	        1791865 (98.1954%)	[B] Total reads after QC of (A)
R2		
R2	        1791865 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        3318277 (92.5928%)	[B-3] Total mapped reads of (B-2)x2
R2	         265453 (7.4072%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1648728 (92.0118%)	[F] Total mapped reads of (B-2)
R2	         143137 (7.9882%)	[G] Total unmapped reads of (B-2)
R2	          29376 (1.6394%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1762489 (98.3606%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	           9254 (0.5164%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      5250.529	[I-3] RPMH of (I-1)
R2	      5164.452	[I-4] PPM of (I-1)
R2	    315019.063	[I-5] RPMU of (I-1)
R2	             15 (0.0008%)	[I-6] Total chimeric reads of (I-1)
R2	         8.511	[I-7] RPMH of (I-6)
R2	         8.371	[I-8] PPM of (I-6)
R2	       510.621	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
5307.7957	5245.9309	450083.7922	9400	0	9400	9400.000	937290	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5249.3945	5163.3354	314950.9804	9252	0	9252	9252.000	921719	ALL_R2	viral	Lymphocryptovirus	0.0
<<
4.5173	4.4646	383.0500	8	0	8	8.000	798	R1U	viral	Lymphocryptovirus	n/a	
<<
7.9433	7.8131	476.5795	14	0	14	14.000	1399	R2U	viral	Lymphocryptovirus	n/a	
0.5674	0.5581	34.0414	1	0	1	1.000	95	R2U	viral	Phix174microvirus	n/a