# 2020/03/25 14:06:35 # HUMAN Target (Host) organism # DNA Sequencing source # ERR006367 Replication ID # SRP000547 Sample ID # ERR006367_1.filt Read1 # ERR006367_2.filt Read2 R1 16015370 (100.0000%) [A] Total raw reads R1 14888062 (92.9611%) [B] Total reads after QC of (A) R1 R1 14888062 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 24108884 (80.9672%) [B-3] Total mapped reads of (B-2)x2 R1 5667240 (19.0328%) [B-4] Total unmapped reads of (B-2)x2 R1 12275848 (82.4543%) [F] Total mapped reads of (B-2) R1 2612214 (17.5457%) [G] Total unmapped reads of (B-2) R1 573094 (3.8494%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 14314968 (96.1506%) [J] Total mapped reads to host genome ( (B-2)-H) R1 34323 (0.2305%) [I-1] Total mapped reads of (H) to exo. genomes R1 2397.700 [I-3] RPMH of (I-1) R1 2305.404 [I-4] PPM of (I-1) R1 59890.699 [I-5] RPMU of (I-1) R1 48 (0.0003%) [I-6] Total chimeric reads of (I-1) R1 3.353 [I-7] RPMH of (I-6) R1 3.224 [I-8] PPM of (I-6) R1 83.756 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 16015370 (100.0000%) [A] Total raw reads R2 14888062 (92.9611%) [B] Total reads after QC of (A) R2 R2 14888062 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 24108884 (80.9672%) [B-3] Total mapped reads of (B-2)x2 R2 5667240 (19.0328%) [B-4] Total unmapped reads of (B-2)x2 R2 11833036 (79.4800%) [F] Total mapped reads of (B-2) R2 3055026 (20.5200%) [G] Total unmapped reads of (B-2) R2 723985 (4.8629%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 14164077 (95.1371%) [J] Total mapped reads to host genome ( (B-2)-H) R2 33891 (0.2276%) [I-1] Total mapped reads of (H) to exo. genomes R2 2392.743 [I-3] RPMH of (I-1) R2 2276.388 [I-4] PPM of (I-1) R2 46811.743 [I-5] RPMU of (I-1) R2 105 (0.0007%) [I-6] Total chimeric reads of (I-1) R2 7.413 [I-7] RPMH of (I-6) R2 7.053 [I-8] PPM of (I-6) R2 145.031 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 59.2342 56.9541 1479.5758 1881 1087 794 847.936 91264 ALL_R1 bacteria Serratia 0.0 23.3259 22.4280 582.6444 549 387 162 333.910 27419 ALL_R1 bacteria Alcanivorax 0.0 12.9163 12.4191 322.6294 356 308 48 184.897 17736 ALL_R1 bacteria Tetrasphaera 3.61e-23 5.9981 5.7672 149.8236 1000 923 77 85.863 48237 ALL_R1 bacteria Cutibacterium 2.63e-88 3.0321 2.9154 75.7363 47 4 43 43.404 2227 ALL_R1 bacteria Bradyrhizobium 1.80e-41 2.0140 1.9365 50.3076 38 12 26 28.831 1821 ALL_R1 bacteria Acidovorax 3.66e-05 << 2059.2047 1979.9386 51435.6266 29478 1 29477 29477.449 1450246 ALL_R1 viral Lymphocryptovirus 0.0 << 56.4173 53.6738 1103.7508 1712 955 757 799.099 78891 ALL_R2 bacteria Serratia 0.0 27.5518 26.2120 539.0250 625 456 169 390.246 30251 ALL_R2 bacteria Alcanivorax 0.0 18.0469 17.1693 353.0709 443 368 75 255.618 21255 ALL_R2 bacteria Tetrasphaera 5.14e-72 5.0514 4.8057 98.8253 854 785 69 71.548 39097 ALL_R2 bacteria Cutibacterium 5.40e-70 2.7494 2.6157 53.7898 46 8 38 38.943 2128 ALL_R2 bacteria Bradyrhizobium 4.13e-30 1.9664 1.8708 38.4704 42 17 25 27.852 1903 ALL_R2 bacteria Acidovorax 8.95e-05 << 2050.7133 1950.9901 40120.2525 29049 5 29044 29046.461 1369949 ALL_R2 viral Lymphocryptovirus 0.0 << 1.0149 0.9758 25.3501 25 19 6 14.528 1250 R1U bacteria Alcanivorax n/a 0.0699 0.0672 1.7449 1 0 1 1.000 51 R1U bacteria Sanguibacteroides n/a 0.0699 0.0672 1.7449 1 0 1 1.000 43 R1U bacteria Desulfotomaculum n/a 0.0699 0.0672 1.7449 1 0 1 1.000 38 R1U bacteria Thermosipho n/a 0.0699 0.0672 1.7449 1 0 1 1.000 36 R1U bacteria Pantoea n/a << 0.0699 0.0672 1.7449 1 0 1 1.000 41 R1U fungi Penicillium n/a << 1.2574 1.2090 31.4085 18 0 18 18.000 893 R1U viral Lymphocryptovirus n/a << 2.1295 2.0259 41.6611 52 43 9 30.162 2556 R2U bacteria Alcanivorax n/a 1.5647 1.4886 30.6111 44 43 1 22.162 2157 R2U bacteria Tetrasphaera n/a 0.2118 0.2015 4.1437 3 0 3 3.000 117 R2U bacteria Streptomyces n/a 0.0706 0.0672 1.3812 1 0 1 1.000 51 R2U bacteria Serratia n/a 0.0706 0.0672 1.3812 1 0 1 1.000 51 R2U bacteria Fenollaria n/a 0.0706 0.0672 1.3812 1 0 1 1.000 49 R2U bacteria Shuttleworthia n/a 0.0706 0.0672 1.3812 1 0 1 1.000 42 R2U bacteria Anaerococcus n/a 0.0706 0.0672 1.3812 1 0 1 1.000 41 R2U bacteria Desulfovermiculus n/a 0.0706 0.0672 1.3812 1 0 1 1.000 40 R2U bacteria Novosphingobium n/a 0.0706 0.0672 1.3812 1 0 1 1.000 39 R2U bacteria Haliea n/a 0.0706 0.0672 1.3812 1 0 1 1.000 38 R2U bacteria Nocardiopsis n/a 0.0706 0.0672 1.3812 1 0 1 1.000 38 R2U bacteria Geobacter n/a 0.0706 0.0672 1.3812 1 0 1 1.000 38 R2U bacteria Azospirillum n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U bacteria Sediminibacterium n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U bacteria Rothia n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U bacteria Nocardia n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U bacteria Cellulosilyticum n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U bacteria Caballeronia n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U bacteria Bordetella n/a 0.0706 0.0672 1.3812 1 0 1 1.000 36 R2U bacteria Nocardioides n/a 0.0706 0.0672 1.3812 1 0 1 1.000 36 R2U bacteria Clostridium n/a 0.0706 0.0672 1.3812 1 0 1 1.000 36 R2U bacteria Arcobacter n/a << 0.0706 0.0672 1.3812 1 0 1 1.000 40 R2U fungi Trichoderma n/a 0.0706 0.0672 1.3812 1 0 1 1.000 38 R2U fungi Schizosaccharomyces n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U fungi Malassezia n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U fungi Cordyceps n/a 0.0706 0.0672 1.3812 1 0 1 1.000 37 R2U fungi Candida n/a 0.0706 0.0672 1.3812 1 0 1 1.000 36 R2U fungi Trametes n/a 0.0706 0.0672 1.3812 1 0 1 1.000 36 R2U fungi Sugiyamaella n/a 0.0706 0.0672 1.3812 1 0 1 1.000 36 R2U fungi Fonsecaea n/a << 1.4120 1.3434 27.6249 20 0 20 20.000 951 R2U viral Lymphocryptovirus n/a