# 2020/03/13 23:02:36
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# SRR791550	Replication ID
# SRP000547	Sample ID
# SRR791550_1.filt	Read1
# SRR791550_2.filt	Read2
R1	       10801807 (100.0000%)	[A] Total raw reads
R1	        8847284 (81.9056%)	[B] Total reads after QC of (A)
R1		
R1	        8847284 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       16434374 (92.8781%)	[B-3] Total mapped reads of (B-2)x2
R1	        1260194 (7.1219%)	[B-4] Total unmapped reads of (B-2)x2
R1	        8252113 (93.2728%)	[F] Total mapped reads of (B-2)
R1	         595171 (6.7272%)	[G] Total unmapped reads of (B-2)
R1	          78399 (0.8861%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        8768885 (99.1139%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          18319 (0.2071%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2089.091	[I-3] RPMH of (I-1)
R1	      2070.579	[I-4] PPM of (I-1)
R1	    233663.695	[I-5] RPMU of (I-1)
R1	            127 (0.0014%)	[I-6] Total chimeric reads of (I-1)
R1	        14.483	[I-7] RPMH of (I-6)
R1	        14.355	[I-8] PPM of (I-6)
R1	      1619.919	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       10801807 (100.0000%)	[A] Total raw reads
R2	        8847284 (81.9056%)	[B] Total reads after QC of (A)
R2		
R2	        8847284 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       16434374 (92.8781%)	[B-3] Total mapped reads of (B-2)x2
R2	        1260194 (7.1219%)	[B-4] Total unmapped reads of (B-2)x2
R2	        8182261 (92.4833%)	[F] Total mapped reads of (B-2)
R2	         665023 (7.5167%)	[G] Total unmapped reads of (B-2)
R2	          99371 (1.1232%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        8747913 (98.8768%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          18156 (0.2052%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2075.466	[I-3] RPMH of (I-1)
R2	      2052.155	[I-4] PPM of (I-1)
R2	    182709.241	[I-5] RPMU of (I-1)
R2	            104 (0.0012%)	[I-6] Total chimeric reads of (I-1)
R2	        11.888	[I-7] RPMH of (I-6)
R2	        11.755	[I-8] PPM of (I-6)
R2	      1046.583	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
2087.3806	2068.8835	233472.3657	18304	0	18304	18304.000	1766503	ALL_R1	viral	Lymphocryptovirus	0.0
<<
2071.5798	2048.3122	182367.0890	18122	0	18122	18122.000	1667242	ALL_R2	viral	Lymphocryptovirus	0.0
<<
14.3690	14.2417	1607.1634	126	0	126	126.000	12260	R1U	viral	Lymphocryptovirus	n/a	
<<
0.2286	0.2261	20.1266	2	0	2	2.000	162	R2U	bacteria	Alcanivorax	n/a	
0.1143	0.1130	10.0633	1	0	1	1.000	98	R2U	bacteria	Staphylococcus	n/a	
0.1143	0.1130	10.0633	1	0	1	1.000	36	R2U	bacteria	Zooshikella	n/a	
<<
0.1143	0.1130	10.0633	1	0	1	1.000	63	R2U	fungi	Coccidioides	n/a	
<<
11.3170	11.1899	996.2665	99	0	99	99.000	8712	R2U	viral	Lymphocryptovirus	n/a