# 2020/03/13 17:21:34
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR244929	Replication ID
# SRP000547	Sample ID
# ERR244929_1.filt	Read1
# ERR244929_2.filt	Read2
R1	        1511720 (100.0000%)	[A] Total raw reads
R1	        1479179 (97.8474%)	[B] Total reads after QC of (A)
R1		
R1	        1479179 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2721850 (92.0054%)	[B-3] Total mapped reads of (B-2)x2
R1	         236508 (7.9946%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1368638 (92.5269%)	[F] Total mapped reads of (B-2)
R1	         110541 (7.4731%)	[G] Total unmapped reads of (B-2)
R1	          11219 (0.7585%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1467960 (99.2415%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            802 (0.0542%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       546.336	[I-3] RPMH of (I-1)
R1	       542.193	[I-4] PPM of (I-1)
R1	     71485.872	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.681	[I-7] RPMH of (I-6)
R1	         0.676	[I-8] PPM of (I-6)
R1	        89.135	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1511720 (100.0000%)	[A] Total raw reads
R2	        1479179 (97.8474%)	[B] Total reads after QC of (A)
R2		
R2	        1479179 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2721850 (92.0054%)	[B-3] Total mapped reads of (B-2)x2
R2	         236508 (7.9946%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1353212 (91.4840%)	[F] Total mapped reads of (B-2)
R2	         125967 (8.5160%)	[G] Total unmapped reads of (B-2)
R2	          17489 (1.1823%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1461690 (98.8177%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            793 (0.0536%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       542.523	[I-3] RPMH of (I-1)
R2	       536.108	[I-4] PPM of (I-1)
R2	     45342.787	[I-5] RPMU of (I-1)
R2	              0 (0.0000%)	[I-6] Total chimeric reads of (I-1)
R2	         0.000	[I-7] RPMH of (I-6)
R2	         0.000	[I-8] PPM of (I-6)
R2	         0.000	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
544.9740	540.8406	71307.6032	800	0	800	800.000	79767	ALL_R1	viral	Lymphocryptovirus	0.0
<<
541.1544	534.7561	45228.4293	791	0	791	791.000	79001	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.6812	0.6761	89.1345	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a