# 2020/03/13 11:36:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243720	Replication ID
# SRP000547	Sample ID
# ERR243720_1.filt	Read1
# ERR243720_2.filt	Read2
R1	        1632473 (100.0000%)	[A] Total raw reads
R1	        1594884 (97.6974%)	[B] Total reads after QC of (A)
R1		
R1	        1594884 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2916213 (91.4240%)	[B-3] Total mapped reads of (B-2)x2
R1	         273555 (8.5760%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1471653 (92.2734%)	[F] Total mapped reads of (B-2)
R1	         123231 (7.7266%)	[G] Total unmapped reads of (B-2)
R1	          12645 (0.7928%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1582239 (99.2072%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            876 (0.0549%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       553.646	[I-3] RPMH of (I-1)
R1	       549.256	[I-4] PPM of (I-1)
R1	     69276.394	[I-5] RPMU of (I-1)
R1	              4 (0.0003%)	[I-6] Total chimeric reads of (I-1)
R1	         2.528	[I-7] RPMH of (I-6)
R1	         2.508	[I-8] PPM of (I-6)
R1	       316.331	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1632473 (100.0000%)	[A] Total raw reads
R2	        1594884 (97.6974%)	[B] Total reads after QC of (A)
R2		
R2	        1594884 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2916213 (91.4240%)	[B-3] Total mapped reads of (B-2)x2
R2	         273555 (8.5760%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1444560 (90.5746%)	[F] Total mapped reads of (B-2)
R2	         150324 (9.4254%)	[G] Total unmapped reads of (B-2)
R2	          24411 (1.5306%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1570473 (98.4694%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            853 (0.0535%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       543.149	[I-3] RPMH of (I-1)
R2	       534.835	[I-4] PPM of (I-1)
R2	     34943.263	[I-5] RPMU of (I-1)
R2	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         0.637	[I-7] RPMH of (I-6)
R2	         0.627	[I-8] PPM of (I-6)
R2	        40.965	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
551.7498	547.3752	69039.1459	873	0	873	873.000	87087	ALL_R1	viral	Lymphocryptovirus	0.0
<<
5.0940	5.0160	327.7211	8	0	8	8.000	729	ALL_R2	bacteria	Alcanivorax	5.17e-68
<<
536.7810	528.5651	34533.6119	843	0	843	843.000	84029	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.5281	2.5080	316.3306	4	0	4	4.000	397	R1U	viral	Lymphocryptovirus	n/a	
<<
0.6368	0.6270	40.9651	1	0	1	1.000	99	R2U	viral	Lymphocryptovirus	n/a