# 2020/03/13 10:54:04
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243678	Replication ID
# SRP000547	Sample ID
# ERR243678_1.filt	Read1
# ERR243678_2.filt	Read2
R1	        1642910 (100.0000%)	[A] Total raw reads
R1	        1606263 (97.7694%)	[B] Total reads after QC of (A)
R1		
R1	        1606263 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2933350 (91.3098%)	[B-3] Total mapped reads of (B-2)x2
R1	         279176 (8.6902%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1481409 (92.2271%)	[F] Total mapped reads of (B-2)
R1	         124854 (7.7729%)	[G] Total unmapped reads of (B-2)
R1	          12546 (0.7811%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1593717 (99.2189%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            835 (0.0520%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       523.932	[I-3] RPMH of (I-1)
R1	       519.840	[I-4] PPM of (I-1)
R1	     66555.077	[I-5] RPMU of (I-1)
R1	              4 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R1	         2.510	[I-7] RPMH of (I-6)
R1	         2.490	[I-8] PPM of (I-6)
R1	       318.827	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1642910 (100.0000%)	[A] Total raw reads
R2	        1606263 (97.7694%)	[B] Total reads after QC of (A)
R2		
R2	        1606263 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2933350 (91.3098%)	[B-3] Total mapped reads of (B-2)x2
R2	         279176 (8.6902%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1451941 (90.3925%)	[F] Total mapped reads of (B-2)
R2	         154322 (9.6075%)	[G] Total unmapped reads of (B-2)
R2	          24956 (1.5537%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1581307 (98.4463%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            799 (0.0497%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       505.278	[I-3] RPMH of (I-1)
R2	       497.428	[I-4] PPM of (I-1)
R2	     32016.349	[I-5] RPMU of (I-1)
R2	              2 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R2	         1.265	[I-7] RPMH of (I-6)
R2	         1.245	[I-8] PPM of (I-6)
R2	        80.141	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
1.8824	1.8677	239.1200	3	0	3	3.000	298	ALL_R1	bacteria	Tetrasphaera	9.33e-06
<<
520.7951	516.7273	66156.5439	830	0	830	830.000	82770	ALL_R1	viral	Lymphocryptovirus	0.0
<<
1.8972	1.8677	120.2116	3	0	3	3.000	300	ALL_R2	bacteria	Alcanivorax	4.12e-11
<<
502.7487	494.9376	31856.0667	795	0	795	795.000	79193	ALL_R2	viral	Lymphocryptovirus	0.0
<<
2.5099	2.4903	318.8267	4	0	4	4.000	400	R1U	viral	Lymphocryptovirus	n/a	
<<
1.2648	1.2451	80.1410	2	0	2	2.000	199	R2U	viral	Lymphocryptovirus	n/a