# 2020/03/13 08:49:13
# HUMAN	Target (Host) organism
# DNA	Sequencing source
# ERR243552	Replication ID
# SRP000547	Sample ID
# ERR243552_1.filt	Read1
# ERR243552_2.filt	Read2
R1	        1572163 (100.0000%)	[A] Total raw reads
R1	        1535350 (97.6584%)	[B] Total reads after QC of (A)
R1		
R1	        1535350 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	        2816235 (91.7131%)	[B-3] Total mapped reads of (B-2)x2
R1	         254465 (8.2869%)	[B-4] Total unmapped reads of (B-2)x2
R1	        1419731 (92.4695%)	[F] Total mapped reads of (B-2)
R1	         115619 (7.5305%)	[G] Total unmapped reads of (B-2)
R1	          11866 (0.7729%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	        1523484 (99.2271%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	            806 (0.0525%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	       529.050	[I-3] RPMH of (I-1)
R1	       524.962	[I-4] PPM of (I-1)
R1	     67925.164	[I-5] RPMU of (I-1)
R1	              1 (0.0001%)	[I-6] Total chimeric reads of (I-1)
R1	         0.656	[I-7] RPMH of (I-6)
R1	         0.651	[I-8] PPM of (I-6)
R1	        84.274	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	        1572163 (100.0000%)	[A] Total raw reads
R2	        1535350 (97.6584%)	[B] Total reads after QC of (A)
R2		
R2	        1535350 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	        2816235 (91.7131%)	[B-3] Total mapped reads of (B-2)x2
R2	         254465 (8.2869%)	[B-4] Total unmapped reads of (B-2)x2
R2	        1396504 (90.9567%)	[F] Total mapped reads of (B-2)
R2	         138846 (9.0433%)	[G] Total unmapped reads of (B-2)
R2	          21139 (1.3768%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	        1514211 (98.6232%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	            819 (0.0533%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	       540.876	[I-3] RPMH of (I-1)
R2	       533.429	[I-4] PPM of (I-1)
R2	     38743.555	[I-5] RPMU of (I-1)
R2	              3 (0.0002%)	[I-6] Total chimeric reads of (I-1)
R2	         1.981	[I-7] RPMH of (I-6)
R2	         1.954	[I-8] PPM of (I-6)
R2	       141.918	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
0.6564	0.6513	84.2744	1	0	1	1.000	100	ALL_R1	bacteria	Sphingomonas	1.55e-04
<<
521.8302	517.7972	66998.1460	795	0	795	795.000	79378	ALL_R1	viral	Lymphocryptovirus	0.0
1.3128	1.3026	168.5488	2	0	2	2.000	145	ALL_R1	viral	Phix174microvirus	n/a
<<
0.6604	0.6513	47.3059	1	0	1	1.000	100	ALL_R2	bacteria	Sphingomonas	1.96e-04
0.6604	0.6513	47.3059	1	0	1	1.000	100	ALL_R2	bacteria	Leifsonia	1.96e-04
<<
534.9321	527.5670	38317.8012	810	0	810	810.000	80790	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.6564	0.6513	84.2744	1	0	1	1.000	100	R1U	viral	Lymphocryptovirus	n/a	
<<
0.6604	0.6513	47.3059	1	0	1	1.000	36	R2U	bacteria	Pseudonocardia	n/a	
<<
1.3208	1.3026	94.6119	2	0	2	2.000	199	R2U	viral	Lymphocryptovirus	n/a