# 2020/01/19 17:11:10
# HUMAN	Target (Host) organism
# RNA	Sequencing source
# ERR204872	Replication ID
# ERR204872	Sample ID
# ERR204872_1	Read1
# ERR204872_2	Read2
R1	       13355004 (100.0000%)	[A] Total raw reads
R1	       12983638 (97.2193%)	[B] Total reads after QC of (A)
R1		
R1	       12983638 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R1	       20721473 (79.7984%)	[B-3] Total mapped reads of (B-2)x2
R1	        5245803 (20.2016%)	[B-4] Total unmapped reads of (B-2)x2
R1	       10400241 (80.1027%)	[F] Total mapped reads of (B-2)
R1	        2583397 (19.8973%)	[G] Total unmapped reads of (B-2)
R1	          43974 (0.3387%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R1	       12939664 (99.6613%)	[J] Total mapped reads to host genome ( (B-2)-H)
R1	          31326 (0.2413%)	[I-1] Total mapped reads of (H) to exo. genomes
R1	      2420.928	[I-3] RPMH of (I-1)
R1	      2412.729	[I-4] PPM of (I-1)
R1	    712375.495	[I-5] RPMU of (I-1)
R1	             94 (0.0007%)	[I-6] Total chimeric reads of (I-1)
R1	         7.264	[I-7] RPMH of (I-6)
R1	         7.240	[I-8] PPM of (I-6)
R1	      2137.627	[I-9] RPMU of (I-6)
R1		
## -----------------------------------------

R2	       13355004 (100.0000%)	[A] Total raw reads
R2	       12983638 (97.2193%)	[B] Total reads after QC of (A)
R2		
R2	       12983638 (100.0000%)	[B-2] Total reads of (B) passed to HISAT2
R2	       20721473 (79.7984%)	[B-3] Total mapped reads of (B-2)x2
R2	        5245803 (20.2016%)	[B-4] Total unmapped reads of (B-2)x2
R2	       10321232 (79.4941%)	[F] Total mapped reads of (B-2)
R2	        2662406 (20.5059%)	[G] Total unmapped reads of (B-2)
R2	          66226 (0.5101%)	[H] Total unmapped reads of (B-2) after running BLASTn with (G)
R2	       12917412 (99.4899%)	[J] Total mapped reads to host genome ( (B-2)-H)
R2	          31177 (0.2401%)	[I-1] Total mapped reads of (H) to exo. genomes
R2	      2413.564	[I-3] RPMH of (I-1)
R2	      2401.253	[I-4] PPM of (I-1)
R2	    470766.768	[I-5] RPMU of (I-1)
R2	             72 (0.0006%)	[I-6] Total chimeric reads of (I-1)
R2	         5.574	[I-7] RPMH of (I-6)
R2	         5.545	[I-8] PPM of (I-6)
R2	      1087.186	[I-9] RPMU of (I-6)
R2		
## -----------------------------------------

##=============================================##
# List threshold of RPMU   > 1
# List threshold of P-value < 0.001
# RPMH	PPM	RPMU	Total	Multi_Reads(All_ExoGenus)	Uniq_Reads(This_Genus)	wTotal	Sum_ReadLength	Type	Exo	Genus	Pvalue(Uniq)
635.8908	633.7371	187115.4091	9609	2618	6991	8228.213	713538	ALL_R1	bacteria	Nocardia	0.0
6.4318	6.4100	1892.5956	97	16	81	83.225	7152	ALL_R1	bacteria	Escherichia	3.36e-69
<<
1507.9990	1502.8916	443739.4824	19513	0	19513	19513.000	1440893	ALL_R1	viral	Lymphocryptovirus	0.0
<<
421.6874	419.5365	82250.3246	9562	7786	1776	5447.110	699327	ALL_R2	bacteria	Nocardia	0.0
6.0902	6.0592	1187.9020	101	24	77	78.670	7346	ALL_R2	bacteria	Escherichia	4.26e-62
<<
1496.8943	1489.2590	291969.9212	19336	0	19336	19336.000	1413408	ALL_R2	viral	Lymphocryptovirus	0.0
<<
0.8462	0.8434	249.0108	12	2	10	10.950	873	R1U	bacteria	Nocardia	n/a	
<<
0.3946	0.3933	116.1141	4	0	3	5.106	238	R1U	fungi	Schizosaccharomyces	n/a	
0.2400	0.2392	70.6326	2	0	1	3.106	150	R1U	fungi	Leptosphaeria	n/a	
<<
3.0140	3.0038	886.8877	39	0	39	39.000	2825	R1U	viral	Lymphocryptovirus	n/a	
<<
0.3047	0.3032	59.4329	6	4	2	3.936	405	R2U	bacteria	Nocardia	n/a	
0.0774	0.0770	15.0998	1	0	1	1.000	57	R2U	bacteria	Roseobacter	n/a	
0.0774	0.0770	15.0998	1	0	1	1.000	55	R2U	bacteria	Neorickettsia	n/a	
0.0774	0.0770	15.0998	1	0	1	1.000	44	R2U	bacteria	Fusobacterium	n/a	
0.0774	0.0770	15.0998	1	0	1	1.000	36	R2U	bacteria	Veillonella	n/a	
<<
0.1617	0.1609	31.5435	5	3	2	2.089	254	R2U	fungi	Aspergillus	n/a	
0.1548	0.1540	30.1996	4	2	2	2.000	176	R2U	fungi	Leptosphaeria	n/a	
0.1548	0.1540	30.1996	4	2	2	2.000	173	R2U	fungi	Pseudogymnoascus	n/a	
0.1548	0.1540	30.1996	3	1	2	2.000	160	R2U	fungi	Schizosaccharomyces	n/a	
0.1197	0.1191	23.3443	2	1	1	1.546	89	R2U	fungi	Metschnikowia	n/a	
0.0843	0.0839	16.4437	3	2	1	1.089	139	R2U	fungi	Neofusicoccum	n/a	
0.0774	0.0770	15.0998	3	2	1	1.000	144	R2U	fungi	Botrytis	n/a	
0.0774	0.0770	15.0998	3	2	1	1.000	133	R2U	fungi	Baudoinia	n/a	
0.0774	0.0770	15.0998	3	2	1	1.000	132	R2U	fungi	Histoplasma	n/a	
0.0774	0.0770	15.0998	2	1	1	1.000	83	R2U	fungi	Saitoella	n/a	
0.0774	0.0770	15.0998	2	1	1	1.000	83	R2U	fungi	Malassezia	n/a	
0.0774	0.0770	15.0998	1	0	1	1.000	56	R2U	fungi	Vittaforma	n/a	
0.0774	0.0770	15.0998	1	0	1	1.000	48	R2U	fungi	Kalmanozyma	n/a	
0.0774	0.0770	15.0998	1	0	1	1.000	38	R2U	fungi	Scedosporium	n/a	
<<
2.4773	2.4646	483.1939	32	0	32	32.000	2307	R2U	viral	Lymphocryptovirus	n/a