# 2020/03/06 07:20:36 # HUMAN Target (Host) organism # RNA Sequencing source # ERR188369 Replication ID # ERR188369 Sample ID # ERR188369_1 Read1 # ERR188369_2 Read2 R1 24461834 (100.0000%) [A] Total raw reads R1 24026541 (98.2205%) [B] Total reads after QC of (A) R1 R1 24026541 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R1 44472021 (92.5477%) [B-3] Total mapped reads of (B-2)x2 R1 3581061 (7.4523%) [B-4] Total unmapped reads of (B-2)x2 R1 22278506 (92.7246%) [F] Total mapped reads of (B-2) R1 1748035 (7.2754%) [G] Total unmapped reads of (B-2) R1 130891 (0.5448%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R1 23895650 (99.4552%) [J] Total mapped reads to host genome ( (B-2)-H) R1 86086 (0.3583%) [I-1] Total mapped reads of (H) to exo. genomes R1 3602.580 [I-3] RPMH of (I-1) R1 3582.954 [I-4] PPM of (I-1) R1 657692.278 [I-5] RPMU of (I-1) R1 119 (0.0005%) [I-6] Total chimeric reads of (I-1) R1 4.980 [I-7] RPMH of (I-6) R1 4.953 [I-8] PPM of (I-6) R1 909.153 [I-9] RPMU of (I-6) R1 ## ----------------------------------------- R2 24461834 (100.0000%) [A] Total raw reads R2 24026541 (98.2205%) [B] Total reads after QC of (A) R2 R2 24026541 (100.0000%) [B-2] Total reads of (B) passed to HISAT2 R2 44472021 (92.5477%) [B-3] Total mapped reads of (B-2)x2 R2 3581061 (7.4523%) [B-4] Total unmapped reads of (B-2)x2 R2 22193515 (92.3708%) [F] Total mapped reads of (B-2) R2 1833026 (7.6292%) [G] Total unmapped reads of (B-2) R2 159763 (0.6649%) [H] Total unmapped reads of (B-2) after running BLASTn with (G) R2 23866778 (99.3351%) [J] Total mapped reads to host genome ( (B-2)-H) R2 85050 (0.3540%) [I-1] Total mapped reads of (H) to exo. genomes R2 3563.531 [I-3] RPMH of (I-1) R2 3539.835 [I-4] PPM of (I-1) R2 532351.045 [I-5] RPMU of (I-1) R2 89 (0.0004%) [I-6] Total chimeric reads of (I-1) R2 3.729 [I-7] RPMH of (I-6) R2 3.704 [I-8] PPM of (I-6) R2 557.075 [I-9] RPMU of (I-6) R2 ## ----------------------------------------- ##=============================================## # List threshold of RPMU > 1 # List threshold of P-value < 0.001 # RPMH PPM RPMU Total Multi_Reads(All_ExoGenus) Uniq_Reads(This_Genus) wTotal Sum_ReadLength Type Exo Genus Pvalue(Uniq) 161.8468 160.9651 29546.9895 4280 1293 2987 3867.435 319250 ALL_R1 bacteria Nocardia 0.0 15.9792 15.8921 2917.1830 421 53 368 381.833 30851 ALL_R1 bacteria Escherichia 0.0 4.8707 4.8441 889.1979 140 31 109 116.388 10488 ALL_R1 bacteria Staphylococcus 3.61e-72 2.8636 2.8480 522.7861 89 23 66 68.428 6533 ALL_R1 bacteria Cutibacterium 1.21e-08 << 154.9331 154.0890 28284.8019 3855 283 3572 3702.226 286619 ALL_R1 fungi Saccharomyces 0.0 << 831.4484 826.9189 151790.4210 19868 0 19868 19868.000 1474355 ALL_R1 viral Lymphocryptovirus 0.0 << 158.9558 157.8988 23746.1928 4269 1285 2984 3793.763 316337 ALL_R2 bacteria Nocardia 0.0 15.3900 15.2876 2299.0868 404 49 355 367.309 29207 ALL_R2 bacteria Escherichia 0.0 4.7558 4.7242 710.4586 132 23 109 113.505 9860 ALL_R2 bacteria Staphylococcus 1.47e-74 2.7416 2.7234 409.5692 81 17 64 65.434 5905 ALL_R2 bacteria Cutibacterium 4.36e-08 << 154.3786 153.3520 23062.4049 3883 316 3567 3684.519 288511 ALL_R2 fungi Saccharomyces 0.0 << 866.0825 860.3235 129382.8859 55476 55474 2 20670.598 4032934 ALL_R2 viral Phix174microvirus n/a 827.3425 821.8411 123595.5759 19746 0 19746 19746.000 1459493 ALL_R2 viral Lymphocryptovirus 0.0 << 0.4185 0.4162 76.3994 10 0 10 10.000 713 R1U bacteria Lachnoclostridium n/a 0.0837 0.0832 15.2799 2 0 2 2.000 150 R1U bacteria Nocardia n/a 0.0837 0.0832 15.2799 2 0 2 2.000 149 R1U bacteria Planococcus n/a << 0.0438 0.0436 7.9990 3 2 1 1.047 225 R1U fungi Saccharomyces n/a 0.0438 0.0436 7.9990 3 2 1 1.047 196 R1U fungi Zymoseptoria n/a 0.0438 0.0436 7.9990 3 2 1 1.047 190 R1U fungi Penicillium n/a 0.0426 0.0423 7.7698 2 1 1 1.017 114 R1U fungi Mixia n/a << 1.5902 1.5816 290.3179 38 0 38 38.000 2658 R1U viral Lymphocryptovirus n/a 0.0837 0.0832 15.2799 2 0 2 2.000 132 R1U viral Betaretrovirus n/a << 0.5028 0.4994 75.1113 12 0 12 12.000 836 R2U bacteria Lachnoclostridium n/a 0.1676 0.1665 25.0371 4 0 4 4.000 295 R2U bacteria Nocardia n/a 0.0419 0.0416 6.2593 1 0 1 1.000 50 R2U bacteria Chlorobaculum n/a 0.0419 0.0416 6.2593 1 0 1 1.000 45 R2U bacteria Grimontia n/a 0.0419 0.0416 6.2593 1 0 1 1.000 36 R2U bacteria Vibrio n/a 0.0419 0.0416 6.2593 1 0 1 1.000 36 R2U bacteria Bacillus n/a << 0.0854 0.0848 12.7564 4 2 2 2.038 232 R2U fungi Saccharomyces n/a 0.0838 0.0832 12.5185 3 1 2 2.000 149 R2U fungi Parastagonospora n/a 0.0436 0.0433 6.5159 4 3 1 1.041 248 R2U fungi Schizosaccharomyces n/a 0.0420 0.0417 6.2780 3 2 1 1.003 169 R2U fungi Botrytis n/a 0.0420 0.0417 6.2780 3 2 1 1.003 159 R2U fungi Serpula n/a 0.0420 0.0417 6.2780 3 2 1 1.003 156 R2U fungi Phycomyces n/a 0.0420 0.0417 6.2780 3 2 1 1.003 155 R2U fungi Metschnikowia n/a 0.0420 0.0417 6.2780 3 2 1 1.003 151 R2U fungi Eutypa n/a 0.0420 0.0417 6.2780 3 2 1 1.003 150 R2U fungi Tuber n/a 0.0419 0.0416 6.2593 2 1 1 1.000 84 R2U fungi Histoplasma n/a 0.0419 0.0416 6.2593 1 0 1 1.000 75 R2U fungi Encephalitozoon n/a 0.0419 0.0416 6.2593 1 0 1 1.000 72 R2U fungi Moniliophthora n/a << 1.3408 1.3319 200.2967 32 0 32 32.000 2257 R2U viral Lymphocryptovirus n/a