#Unique_Reads Genus Species # 15 reads uniquely mapped to Achromobacter (multi-hits among diff. species in Achromobacter allowed) 7 Achromobacter Achromobacter xylosoxidans 3 Achromobacter Achromobacter xylosoxidans C54 2 Achromobacter Achromobacter xylosoxidans A8 1 Achromobacter Achromobacter denitrificans NBRC 15125 1 Achromobacter Achromobacter denitrificans 1 Achromobacter Achromobacter sp. DMS1 # 19 reads uniquely mapped to Acidovorax (multi-hits among diff. species in Acidovorax allowed) 5 Acidovorax Acidovorax ebreus TPSY 3 Acidovorax Acidovorax sp. RAC01 3 Acidovorax Acidovorax sp. JS42 2 Acidovorax Acidovorax caeni 2 Acidovorax Acidovorax sp. Root217 2 Acidovorax Acidovorax sp. KKS102 2 Acidovorax Acidovorax citrulli AAC00-1 # 9121 reads uniquely mapped to Acinetobacter (multi-hits among diff. species in Acinetobacter allowed) 9084 Acinetobacter Acinetobacter rudis 6 Acinetobacter Acinetobacter johnsonii XBB1 3 Acinetobacter Acinetobacter harbinensis 3 Acinetobacter Acinetobacter lwoffii NCTC 5866 = CIP 64.10 = NIPH 512 2 Acinetobacter Acinetobacter soli 2 Acinetobacter NC_011586 2 Acinetobacter Acinetobacter junii 2 Acinetobacter Acinetobacter baumannii 2 Acinetobacter Acinetobacter baumannii AYE 1 Acinetobacter Acinetobacter sp. ADP1 1 Acinetobacter Acinetobacter brisouii CIP 110357 1 Acinetobacter Acinetobacter beijerinckii CIP 110307 1 Acinetobacter Acinetobacter gyllenbergii NIPH 230 1 Acinetobacter Acinetobacter calcoaceticus 1 Acinetobacter Acinetobacter towneri 1 Acinetobacter Acinetobacter ursingii DSM 16037 = CIP 107286 1 Acinetobacter Acinetobacter baumannii MDR-TJ 1 Acinetobacter Acinetobacter gerneri DSM 14967 = CIP 107464 1 Acinetobacter Acinetobacter schindleri 1 Acinetobacter Acinetobacter schindleri CIP 107287 1 Acinetobacter Acinetobacter indicus CIP 110367 1 Acinetobacter Acinetobacter baumannii TYTH-1 1 Acinetobacter Acinetobacter sp. NCu2D-2 1 Acinetobacter Acinetobacter larvae # 14 reads uniquely mapped to Actinobaculum (multi-hits among diff. species in Actinobaculum allowed) 9 Actinobaculum Actinobaculum massiliense ACS-171-V-Col2 4 Actinobaculum Actinobaculum sp. oral taxon 183 str. F0552 1 Actinobaculum Actinobaculum suis # 27 reads uniquely mapped to Actinomyces (multi-hits among diff. species in Actinomyces allowed) 10 Actinomyces Actinomyces oris 4 Actinomyces Actinomyces radicidentis 3 Actinomyces Actinomyces sp. VUL4_3 3 Actinomyces Actinomyces johnsonii F0542 3 Actinomyces Actinomyces vaccimaxillae DSM 15804 1 Actinomyces Actinomyces massiliensis 4401292 1 Actinomyces Actinomyces dentalis DSM 19115 1 Actinomyces Actinomyces hongkongensis 1 Actinomyces Actinomyces timonensis DSM 23838 # 23 reads uniquely mapped to Aeromicrobium (multi-hits among diff. species in Aeromicrobium allowed) 4 Aeromicrobium Aeromicrobium erythreum 4 Aeromicrobium Aeromicrobium sp. Root472D3 4 Aeromicrobium Aeromicrobium sp. Root495 3 Aeromicrobium Aeromicrobium sp. Root236 3 Aeromicrobium Aeromicrobium marinum DSM 15272 3 Aeromicrobium Aeromicrobium massiliense JC14 2 Aeromicrobium Aeromicrobium sp. Leaf291 # 25 reads uniquely mapped to Afipia (multi-hits among diff. species in Afipia allowed) 6 Afipia Afipia broomeae ATCC 49717 6 Afipia Afipia birgiae 34632 6 Afipia Afipia sp. Root123D2 5 Afipia Afipia sp. P52-10 1 Afipia Afipia clevelandensis ATCC 49720 1 Afipia Afipia felis ATCC 53690 # 12 reads uniquely mapped to Aggregatibacter (multi-hits among diff. species in Aggregatibacter allowed) 6 Aggregatibacter Aggregatibacter aphrophilus NJ8700 4 Aggregatibacter Aggregatibacter aphrophilus 1 Aggregatibacter Aggregatibacter actinomycetemcomitans 1 Aggregatibacter NZ_CP008984 # 5 reads uniquely mapped to Algoriphagus (multi-hits among diff. species in Algoriphagus allowed) 3 Algoriphagus Algoriphagus terrigena DSM 22685 2 Algoriphagus Algoriphagus sp. M8-2 # 13 reads uniquely mapped to Aliihoeflea (multi-hits among diff. species in Aliihoeflea allowed) 13 Aliihoeflea Aliihoeflea sp. 2WW # 12 reads uniquely mapped to Alkanindiges (multi-hits among diff. species in Alkanindiges allowed) 12 Alkanindiges Alkanindiges illinoisensis DSM 15370 # 5 reads uniquely mapped to Anaerococcus (multi-hits among diff. species in Anaerococcus allowed) 2 Anaerococcus Anaerococcus lactolyticus ATCC 51172 1 Anaerococcus Anaerococcus provenciensis 1 Anaerococcus Anaerococcus hydrogenalis DSM 7454 1 Anaerococcus Anaerococcus obesiensis ph10 # 14 reads uniquely mapped to Anoxybacillus (multi-hits among diff. species in Anoxybacillus allowed) 5 Anoxybacillus Anoxybacillus sp. B2M1 3 Anoxybacillus Anoxybacillus gonensis 3 Anoxybacillus Anoxybacillus flavithermus WK1 2 Anoxybacillus Anoxybacillus amylolyticus 1 Anoxybacillus Anoxybacillus sp. B7M1 # 62 reads uniquely mapped to Aquabacterium (multi-hits among diff. species in Aquabacterium allowed) 58 Aquabacterium Aquabacterium parvum 4 Aquabacterium Aquabacterium sp. NJ1 # 26 reads uniquely mapped to Arthrobacter (multi-hits among diff. species in Arthrobacter allowed) 5 Arthrobacter Arthrobacter alpinus 3 Arthrobacter Arthrobacter sp. FB24 3 Arthrobacter Arthrobacter sp. ERGS1:01 2 Arthrobacter Arthrobacter sp. YC-RL1 2 Arthrobacter Arthrobacter sp. L77 2 Arthrobacter Arthrobacter sp. Rue61a 2 Arthrobacter Arthrobacter sp. U41 2 Arthrobacter Arthrobacter sp. LS16 1 Arthrobacter Arthrobacter sp. Hiyo1 1 Arthrobacter Arthrobacter sp. 35W 1 Arthrobacter Arthrobacter sp. ZXY-2 1 Arthrobacter Arthrobacter globiformis NBRC 12137 1 Arthrobacter Arthrobacter sp. Soil782 # 18 reads uniquely mapped to Asticcacaulis (multi-hits among diff. species in Asticcacaulis allowed) 7 Asticcacaulis Asticcacaulis sp. AC466 4 Asticcacaulis Asticcacaulis excentricus CB 48 4 Asticcacaulis Asticcacaulis sp. YBE204 2 Asticcacaulis Asticcacaulis biprosthecum C19 1 Asticcacaulis Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 # 7 reads uniquely mapped to Atopobium (multi-hits among diff. species in Atopobium allowed) 2 Atopobium Atopobium rimae ATCC 49626 2 Atopobium Atopobium parvulum DSM 20469 1 Atopobium Atopobium sp. oral taxon 199 str. F0494 1 Atopobium Atopobium fossor DSM 15642 1 Atopobium Atopobium vaginae DSM 15829 # 66 reads uniquely mapped to Bacillus (multi-hits among diff. species in Bacillus allowed) 30 Bacillus Bacillus vireti LMG 21834 6 Bacillus Bacillus weihenstephanensis 4 Bacillus Bacillus subtilis BSn5 4 Bacillus Bacillus badius 2 Bacillus Bacillus coagulans 36D1 2 Bacillus Bacillus anthracis 2 Bacillus Bacillus subtilis BEST7003 1 Bacillus Bacillus manliponensis 1 Bacillus Bacillus sp. FJAT-22090 1 Bacillus Bacillus sp. FJAT-27916 1 Bacillus Bacillus smithii 1 Bacillus Bacillus thuringiensis 1 Bacillus Bacillus beveridgei 1 Bacillus Bacillus thermotolerans 1 Bacillus Bacillus bogoriensis ATCC BAA-922 1 Bacillus Bacillus safensis 1 Bacillus Bacillus cereus ATCC 4342 1 Bacillus Bacillus humi 1 Bacillus Bacillus subtilis 1 Bacillus Bacillus sp. FJAT-18019 1 Bacillus Bacillus cereus 1 Bacillus Bacillus xiamenensis 1 Bacillus Bacillus velezensis # 5 reads uniquely mapped to Bacteroides (multi-hits among diff. species in Bacteroides allowed) 2 Bacteroides Bacteroides uniformis ATCC 8492 1 Bacteroides Bacteroides vulgatus ATCC 8482 1 Bacteroides Bacteroides coprocola DSM 17136 1 Bacteroides Bacteroides reticulotermitis JCM 10512 # 9 reads uniquely mapped to Bordetella (multi-hits among diff. species in Bordetella allowed) 4 Bordetella Bordetella pertussis 2 Bordetella Bordetella petrii 1 Bordetella Bordetella sp. N 1 Bordetella Bordetella flabilis 1 Bordetella Bordetella bronchiseptica RB50 # 48 reads uniquely mapped to Bradyrhizobium (multi-hits among diff. species in Bradyrhizobium allowed) 10 Bradyrhizobium Bradyrhizobium sp. BTAi1 4 Bradyrhizobium Bradyrhizobium sp. ARR65 4 Bradyrhizobium Bradyrhizobium japonicum 4 Bradyrhizobium Bradyrhizobium elkanii USDA 76 4 Bradyrhizobium Bradyrhizobium diazoefficiens 4 Bradyrhizobium Bradyrhizobium sp. LTSP857 3 Bradyrhizobium Bradyrhizobium sp. S23321 3 Bradyrhizobium Bradyrhizobium neotropicale 3 Bradyrhizobium Bradyrhizobium sp. Tv2a-2 2 Bradyrhizobium Bradyrhizobium icense 2 Bradyrhizobium Bradyrhizobium oligotrophicum S58 1 Bradyrhizobium Bradyrhizobium genosp. SA-4 str. CB756 1 Bradyrhizobium Bradyrhizobium japonicum USDA 6 1 Bradyrhizobium Bradyrhizobium sp. CCGE-LA001 1 Bradyrhizobium Bradyrhizobium sp. AS23.2 1 Bradyrhizobium Bradyrhizobium sp. STM 3843 # 22 reads uniquely mapped to Brevibacterium (multi-hits among diff. species in Brevibacterium allowed) 13 Brevibacterium Brevibacterium linens 5 Brevibacterium Brevibacterium mcbrellneri ATCC 49030 3 Brevibacterium Brevibacterium album DSM 18261 1 Brevibacterium Brevibacterium ravenspurgense 5401308 = CCUG 53855 # 24 reads uniquely mapped to Brevundimonas (multi-hits among diff. species in Brevundimonas allowed) 5 Brevundimonas Brevundimonas naejangsanensis 4 Brevundimonas Brevundimonas aveniformis DSM 17977 3 Brevundimonas Brevundimonas diminuta ATCC 11568 3 Brevundimonas Brevundimonas sp. GW460-12-10-14-LB2 3 Brevundimonas Brevundimonas sp. DS20 2 Brevundimonas Brevundimonas nasdae 1 Brevundimonas Brevundimonas abyssalis TAR-001 1 Brevundimonas Brevundimonas sp. Leaf363 1 Brevundimonas Brevundimonas sp. LM2 1 Brevundimonas Brevundimonas subvibrioides ATCC 15264 # 14 reads uniquely mapped to Brochothrix (multi-hits among diff. species in Brochothrix allowed) 8 Brochothrix Brochothrix thermosphacta DSM 20171 = FSL F6-1036 6 Brochothrix Brochothrix campestris FSL F6-1037 # 31 reads uniquely mapped to Burkholderia (multi-hits among diff. species in Burkholderia allowed) 4 Burkholderia Burkholderia contaminans 4 Burkholderia Burkholderia lata 4 Burkholderia Candidatus Burkholderia crenata 2 Burkholderia Burkholderia pseudomallei HBPUB10134a 2 Burkholderia Burkholderia pseudomallei 2 Burkholderia Burkholderia ubonensis 2 Burkholderia Burkholderia cenocepacia 1 Burkholderia Burkholderia gladioli BSR3 1 Burkholderia Burkholderia sp. CCGE1001 1 Burkholderia Burkholderia multivorans 1 Burkholderia Burkholderia dolosa AU0158 1 Burkholderia Burkholderia sp. YI23 1 Burkholderia Burkholderia pseudomallei MSHR840 1 Burkholderia Burkholderia glumae BGR1 1 Burkholderia Burkholderia multivorans ATCC 17616 1 Burkholderia Burkholderia stabilis 1 Burkholderia Burkholderia pseudomallei MSHR305 1 Burkholderia Burkholderia pyrrocinia # 17 reads uniquely mapped to Caballeronia (multi-hits among diff. species in Caballeronia allowed) 10 Caballeronia Caballeronia zhejiangensis 6 Caballeronia Caballeronia udeis 1 Caballeronia Caballeronia glathei # 2 reads uniquely mapped to Caldibacillus (multi-hits among diff. species in Caldibacillus allowed) 2 Caldibacillus Caldibacillus debilis DSM 16016 # 9 reads uniquely mapped to Caldimonas (multi-hits among diff. species in Caldimonas allowed) 9 Caldimonas Caldimonas manganoxidans ATCC BAA-369 # 39 reads uniquely mapped to Campylobacter (multi-hits among diff. species in Campylobacter allowed) 37 Campylobacter Campylobacter mucosalis 1 Campylobacter Campylobacter concisus 1 Campylobacter Campylobacter concisus 13826 # 14 reads uniquely mapped to Carnobacterium (multi-hits among diff. species in Carnobacterium allowed) 3 Carnobacterium Carnobacterium jeotgali MS3 3 Carnobacterium Carnobacterium maltaromaticum LMA28 3 Carnobacterium Carnobacterium inhibens subsp. gilichinskyi 2 Carnobacterium Carnobacterium funditum DSM 5970 1 Carnobacterium Carnobacterium divergens DSM 20623 1 Carnobacterium Carnobacterium sp. ZWU0011 1 Carnobacterium Carnobacterium sp. 17-4 # 22 reads uniquely mapped to Cellulomonas (multi-hits among diff. species in Cellulomonas allowed) 4 Cellulomonas Cellulomonas bogoriensis 69B4 = DSM 16987 3 Cellulomonas Cellulomonas sp. Root930 3 Cellulomonas Cellulomonas flavigena DSM 20109 3 Cellulomonas Cellulomonas iranensis NBRC 101100 = JCM 18110 2 Cellulomonas Cellulomonas sp. KRMCY2 2 Cellulomonas Cellulomonas carbonis T26 1 Cellulomonas Cellulomonas sp. A375-1 1 Cellulomonas Cellulomonas flavigena 1 Cellulomonas Cellulomonas sp. HZM 1 Cellulomonas Cellulomonas sp. URHE0023 1 Cellulomonas Cellulomonas gilvus ATCC 13127 # 6 reads uniquely mapped to Chryseobacterium (multi-hits among diff. species in Chryseobacterium allowed) 1 Chryseobacterium NZ_JASZ01000158 1 Chryseobacterium Chryseobacterium formosense 1 Chryseobacterium Chryseobacterium halperniae 1 Chryseobacterium Chryseobacterium aquaticum 1 Chryseobacterium Chryseobacterium caeni DSM 17710 1 Chryseobacterium Chryseobacterium sp. YR460 # 20 reads uniquely mapped to Citricoccus (multi-hits among diff. species in Citricoccus allowed) 20 Citricoccus Citricoccus sp. CH26A # 27 reads uniquely mapped to Citrobacter (multi-hits among diff. species in Citrobacter allowed) 12 Citrobacter Citrobacter freundii 4 Citrobacter Citrobacter rodentium ICC168 3 Citrobacter Citrobacter freundii CFNIH1 2 Citrobacter Citrobacter amalonaticus 2 Citrobacter Citrobacter braakii 2 Citrobacter Citrobacter sp. FDAARGOS_156 1 Citrobacter Citrobacter werkmanii 1 Citrobacter Citrobacter koseri ATCC BAA-895 # 29 reads uniquely mapped to Comamonas (multi-hits among diff. species in Comamonas allowed) 20 Comamonas Comamonas kerstersii 3 Comamonas Comamonas testosteroni TK102 2 Comamonas Comamonas aquatica 2 Comamonas Comamonas granuli NBRC 101663 1 Comamonas Comamonas testosteroni CNB-2 1 Comamonas Comamonas badia DSM 17552 # 51 reads uniquely mapped to Corynebacterium (multi-hits among diff. species in Corynebacterium allowed) 12 Corynebacterium Corynebacterium variabile 11 Corynebacterium Corynebacterium aurimucosum 5 Corynebacterium Corynebacterium pseudotuberculosis 4 Corynebacterium Corynebacterium xerosis NBRC 16721 3 Corynebacterium Corynebacterium accolens ATCC 49725 2 Corynebacterium Corynebacterium lipophiloflavum DSM 44291 2 Corynebacterium Corynebacterium ureicelerivorans 1 Corynebacterium Corynebacterium sp. NML98-0116 1 Corynebacterium Corynebacterium matruchotii ATCC 14266 1 Corynebacterium Corynebacterium crudilactis 1 Corynebacterium Corynebacterium freneyi DNF00450 1 Corynebacterium Corynebacterium simulans 1 Corynebacterium Corynebacterium casei LMG S-19264 1 Corynebacterium Corynebacterium pseudotuberculosis C231 1 Corynebacterium Corynebacterium aquilae DSM 44791 1 Corynebacterium Corynebacterium kroppenstedtii DSM 44385 1 Corynebacterium Corynebacterium riegelii 1 Corynebacterium Corynebacterium atypicum 1 Corynebacterium Corynebacterium afermentans subsp. afermentans # 254 reads uniquely mapped to Cupriavidus (multi-hits among diff. species in Cupriavidus allowed) 161 Cupriavidus Cupriavidus basilensis 73 Cupriavidus Cupriavidus metallidurans CH34 5 Cupriavidus Cupriavidus sp. USMAA2-4 3 Cupriavidus Cupriavidus gilardii CR3 2 Cupriavidus Ralstonia eutropha H16 2 Cupriavidus Cupriavidus sp. USMAA1020 2 Cupriavidus Cupriavidus necator N-1 2 Cupriavidus Ralstonia eutropha JMP134 2 Cupriavidus Cupriavidus necator 1 Cupriavidus Cupriavidus sp. USMAHM13 1 Cupriavidus Cupriavidus taiwanensis LMG 19424 # 83 reads uniquely mapped to Curvibacter (multi-hits among diff. species in Curvibacter allowed) 78 Curvibacter Curvibacter lanceolatus ATCC 14669 5 Curvibacter Curvibacter sp. PAE-UM # 583 reads uniquely mapped to Cutibacterium (multi-hits among diff. species in Cutibacterium allowed) 172 Cutibacterium Cutibacterium acnes 77 Cutibacterium Propionibacterium acnes subsp. defendens ATCC 11828 40 Cutibacterium Propionibacterium acnes HL096PA1 37 Cutibacterium Propionibacterium acnes hdn-1 35 Cutibacterium Propionibacterium acnes 6609 33 Cutibacterium Propionibacterium acnes C1 32 Cutibacterium Propionibacterium acnes TypeIA2 P.acn31 29 Cutibacterium Propionibacterium acnes SK137 27 Cutibacterium Propionibacterium acnes TypeIA2 P.acn33 27 Cutibacterium Propionibacterium acnes KPA171202 24 Cutibacterium Propionibacterium acnes 266 19 Cutibacterium Propionibacterium acnes TypeIA2 P.acn17 11 Cutibacterium Cutibacterium granulosum DSM 20700 9 Cutibacterium [Propionibacterium] namnetense SK182B-JCVI 5 Cutibacterium Cutibacterium avidum 3 Cutibacterium Cutibacterium avidum 44067 3 Cutibacterium [Propionibacterium] humerusii P08 # 18 reads uniquely mapped to Dechloromonas (multi-hits among diff. species in Dechloromonas allowed) 10 Dechloromonas Dechloromonas agitata is5 8 Dechloromonas Dechloromonas aromatica RCB # 18 reads uniquely mapped to Delftia (multi-hits among diff. species in Delftia allowed) 8 Delftia Delftia tsuruhatensis 5 Delftia Delftia sp. Cs1-4 3 Delftia Delftia acidovorans SPH-1 2 Delftia Delftia sp. HK171 # 21 reads uniquely mapped to Dermacoccus (multi-hits among diff. species in Dermacoccus allowed) 13 Dermacoccus Dermacoccus nishinomiyaensis 8 Dermacoccus Dermacoccus sp. PE3 # 13 reads uniquely mapped to Desulfotomaculum (multi-hits among diff. species in Desulfotomaculum allowed) 2 Desulfotomaculum Desulfotomaculum gibsoniae DSM 7213 2 Desulfotomaculum Desulfotomaculum acetoxidans DSM 771 2 Desulfotomaculum Desulfotomaculum reducens MI-1 2 Desulfotomaculum Desulfotomaculum ferrireducens 2 Desulfotomaculum Desulfotomaculum thermocisternum DSM 10259 1 Desulfotomaculum Desulfotomaculum nigrificans CO-1-SRB 1 Desulfotomaculum Desulfotomaculum hydrothermale Lam5 = DSM 18033 1 Desulfotomaculum Desulfotomaculum ruminis DSM 2154 # 21 reads uniquely mapped to Dietzia (multi-hits among diff. species in Dietzia allowed) 10 Dietzia Dietzia maris 5 Dietzia Dietzia alimentaria 72 3 Dietzia Dietzia sp. UCD-THP 3 Dietzia Dietzia timorensis # 13 reads uniquely mapped to Ensifer (multi-hits among diff. species in Ensifer allowed) 10 Ensifer Ensifer adhaerens 2 Ensifer Ensifer sojae CCBAU 05684 1 Ensifer Ensifer sp. LC163 # 15 reads uniquely mapped to Enterococcus (multi-hits among diff. species in Enterococcus allowed) 5 Enterococcus Enterococcus faecium 2 Enterococcus Enterococcus haemoperoxidus ATCC BAA-382 2 Enterococcus Enterococcus columbae DSM 7374 = ATCC 51263 1 Enterococcus Enterococcus hirae 1 Enterococcus Enterococcus faecalis str. Symbioflor 1 1 Enterococcus Enterococcus faecalis 1 Enterococcus Enterococcus massiliensis 1 Enterococcus Enterococcus cecorum 1 Enterococcus Enterococcus dispar ATCC 51266 # 14 reads uniquely mapped to Erwinia (multi-hits among diff. species in Erwinia allowed) 3 Erwinia Erwinia billingiae Eb661 2 Erwinia Erwinia sp. Leaf53 2 Erwinia Erwinia tasmaniensis Et1/99 2 Erwinia Erwinia gerundensis 1 Erwinia Erwinia oleae 1 Erwinia Erwinia amylovora ATCC 49946 1 Erwinia Erwinia sp. Ejp617 1 Erwinia Erwinia persicina NBRC 102418 1 Erwinia Erwinia amylovora CFBP1430 # 798 reads uniquely mapped to Escherichia (multi-hits among diff. species in Escherichia allowed) 409 Escherichia Escherichia coli 103 Escherichia Escherichia coli K-12 50 Escherichia Escherichia coli B 30 Escherichia Escherichia coli 'BL21-Gold(DE3)pLysS AG' 27 Escherichia Escherichia coli BL21(DE3) 24 Escherichia Escherichia coli BW2952 23 Escherichia Escherichia coli O157:H7 8 Escherichia Escherichia coli KO11FL 7 Escherichia Escherichia albertii KF1 7 Escherichia Escherichia coli str. K-12 substr. MG1655 6 Escherichia Escherichia coli O55:H7 str. RM12579 6 Escherichia Escherichia coli W 6 Escherichia Escherichia coli O26:H11 str. 11368 5 Escherichia Escherichia coli O157 4 Escherichia Escherichia coli UMN026 3 Escherichia Escherichia coli ETEC H10407 3 Escherichia Escherichia coli O25b:H4-ST131 3 Escherichia Escherichia coli 1303 3 Escherichia Escherichia coli O104:H4 str. C227-11 3 Escherichia Escherichia coli SE11 3 Escherichia Escherichia fergusonii ATCC 35469 3 Escherichia Escherichia coli ECC-1470 2 Escherichia Escherichia coli O157:H7 str. EC4115 2 Escherichia Escherichia coli 042 2 Escherichia Escherichia coli O7:K1 str. CE10 2 Escherichia Escherichia coli P12b 2 Escherichia Escherichia coli UMNK88 2 Escherichia Escherichia coli O139:H28 str. E24377A 2 Escherichia Escherichia coli O145:H28 str. RM13514 2 Escherichia Escherichia coli O103:H2 str. 12009 2 Escherichia Escherichia coli O55:H7 str. CB9615 2 Escherichia Escherichia coli APEC IMT5155 2 Escherichia Escherichia coli O145:H28 str. RM12581 2 Escherichia Escherichia coli LY180 2 Escherichia Escherichia coli IAI39 2 Escherichia Escherichia coli RS218 2 Escherichia Escherichia coli O83:H1 str. NRG 857C 2 Escherichia Escherichia coli LF82 2 Escherichia Escherichia coli APEC O78 2 Escherichia Escherichia coli ACN001 1 Escherichia Escherichia coli O111:H- str. 11128 1 Escherichia Escherichia coli IAI1 1 Escherichia Escherichia coli PCN033 1 Escherichia NZ_CP018770 1 Escherichia Escherichia coli NU14 1 Escherichia Escherichia coli HS 1 Escherichia Escherichia coli APEC O1 1 Escherichia Escherichia coli str. 'clone D i2' 1 Escherichia Escherichia coli Xuzhou21 1 Escherichia Escherichia coli O104:H4 str. 2011C-3493 1 Escherichia Escherichia coli O157:H7 str. Sakai 1 Escherichia Escherichia coli O157:H7 str. TW14359 1 Escherichia Escherichia coli UTI89 1 Escherichia Escherichia coli str. K-12 substr. DH10B 1 Escherichia Escherichia coli ABU 83972 1 Escherichia NZ_CP014197 1 Escherichia Escherichia coli O157:H7 str. EDL933 1 Escherichia Escherichia coli str. K-12 substr. MC4100 1 Escherichia Escherichia coli str. Sanji 1 Escherichia Escherichia coli IHE3034 1 Escherichia Escherichia coli JJ1886 1 Escherichia Escherichia coli UM146 1 Escherichia Escherichia coli str. 'clone D i14' 1 Escherichia Escherichia albertii 1 Escherichia Escherichia coli O104:H4 str. 2009EL-2050 1 Escherichia Escherichia coli DH1 # 13 reads uniquely mapped to Eubacterium (multi-hits among diff. species in Eubacterium allowed) 3 Eubacterium [Eubacterium] hallii DSM 3353 2 Eubacterium Eubacterium limosum KIST612 2 Eubacterium Eubacterium sp. AB3007 2 Eubacterium Eubacterium sp. 14-2 1 Eubacterium Eubacterium ventriosum ATCC 27560 1 Eubacterium [Eubacterium] eligens ATCC 27750 1 Eubacterium Eubacterium plexicaudatum ASF492 1 Eubacterium Eubacterium sp. 3_1_31 # 9175 reads uniquely mapped to Flavobacterium (multi-hits among diff. species in Flavobacterium allowed) 9170 Flavobacterium Flavobacterium succinicans LMG 10402 1 Flavobacterium Flavobacterium sp. B17 1 Flavobacterium Flavobacterium johnsoniae UW101 1 Flavobacterium Flavobacterium seoulense 1 Flavobacterium Flavobacterium sp. PK15 1 Flavobacterium Flavobacterium columnare # 21 reads uniquely mapped to Frankia (multi-hits among diff. species in Frankia allowed) 7 Frankia Frankia symbiont of Datisca glomerata 6 Frankia Frankia sp. Iso899 2 Frankia Frankia casuarinae 1 Frankia Frankia inefficax 1 Frankia Frankia sp. CN3 1 Frankia Frankia elaeagni 1 Frankia Frankia alni ACN14a 1 Frankia Frankia sp. EAN1pec 1 Frankia Frankia discariae # 20 reads uniquely mapped to Frigoribacterium (multi-hits among diff. species in Frigoribacterium allowed) 20 Frigoribacterium Frigoribacterium sp. Leaf254 # 9 reads uniquely mapped to Gardnerella (multi-hits among diff. species in Gardnerella allowed) 5 Gardnerella Gardnerella vaginalis HMP9231 3 Gardnerella Gardnerella vaginalis ATCC 14019 1 Gardnerella Gardnerella vaginalis ATCC 14018 = JCM 11026 # 15 reads uniquely mapped to Gemella (multi-hits among diff. species in Gemella allowed) 12 Gemella Gemella haemolysans ATCC 10379 2 Gemella Gemella sanguinis ATCC 700632 1 Gemella Gemella sp. oral taxon 928 # 21 reads uniquely mapped to Glutamicibacter (multi-hits among diff. species in Glutamicibacter allowed) 12 Glutamicibacter Glutamicibacter halophytocola 9 Glutamicibacter Glutamicibacter arilaitensis Re117 # 19 reads uniquely mapped to Gordonia (multi-hits among diff. species in Gordonia allowed) 6 Gordonia Gordonia polyisoprenivorans VH2 3 Gordonia Gordonia araii NBRC 100433 2 Gordonia Gordonia malaquae NBRC 108250 2 Gordonia Gordonia hirsuta DSM 44140 = NBRC 16056 2 Gordonia Gordonia bronchialis DSM 43247 1 Gordonia Gordonia soli NBRC 108243 1 Gordonia Gordonia shandongensis DSM 45094 1 Gordonia Gordonia sp. KTR9 1 Gordonia Gordonia amarae NBRC 15530 # 7 reads uniquely mapped to Granulicatella (multi-hits among diff. species in Granulicatella allowed) 7 Granulicatella Granulicatella adiacens ATCC 49175 # 17 reads uniquely mapped to Haematomicrobium (multi-hits among diff. species in Haematomicrobium allowed) 17 Haematomicrobium Haematomicrobium sanguinis DSM 21259 # 16 reads uniquely mapped to Haemophilus (multi-hits among diff. species in Haemophilus allowed) 8 Haemophilus [Haemophilus] ducreyi 3 Haemophilus Haemophilus parainfluenzae T3T1 1 Haemophilus NC_009566 1 Haemophilus [Haemophilus] parasuis 1 Haemophilus Haemophilus influenzae 1 Haemophilus Haemophilus parasuis SH0165 1 Haemophilus Haemophilus sputorum CCUG 13788 # 17 reads uniquely mapped to Hymenobacter (multi-hits among diff. species in Hymenobacter allowed) 9 Hymenobacter Hymenobacter terrenus 4 Hymenobacter Hymenobacter sp. IS2118 3 Hymenobacter Hymenobacter sp. PAMC 26554 1 Hymenobacter Hymenobacter sp. DG25A # 8 reads uniquely mapped to Ideonella (multi-hits among diff. species in Ideonella allowed) 6 Ideonella Ideonella sakaiensis 2 Ideonella Ideonella sp. B508-1 # 23 reads uniquely mapped to Janibacter (multi-hits among diff. species in Janibacter allowed) 9 Janibacter Janibacter terrae 6 Janibacter Janibacter sp. Soil728 6 Janibacter Janibacter hoylei PVAS-1 2 Janibacter Janibacter sp. HTCC2649 # 15 reads uniquely mapped to Janthinobacterium (multi-hits among diff. species in Janthinobacterium allowed) 4 Janthinobacterium Janthinobacterium sp. B9-8 2 Janthinobacterium Janthinobacterium sp. LM6 2 Janthinobacterium Janthinobacterium sp. Marseille 2 Janthinobacterium Janthinobacterium sp. CG3 2 Janthinobacterium Janthinobacterium sp. HH01 2 Janthinobacterium Janthinobacterium sp. 1_2014MBL_MicDiv 1 Janthinobacterium Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 # 10 reads uniquely mapped to Jeotgalicoccus (multi-hits among diff. species in Jeotgalicoccus allowed) 6 Jeotgalicoccus Jeotgalicoccus saudimassiliensis 3 Jeotgalicoccus Jeotgalicoccus psychrophilus DSM 19085 1 Jeotgalicoccus Jeotgalicoccus marinus DSM 19772 # 25 reads uniquely mapped to Klebsiella (multi-hits among diff. species in Klebsiella allowed) 11 Klebsiella Klebsiella pneumoniae 3 Klebsiella Klebsiella oxytoca 2 Klebsiella Klebsiella michiganensis E718 2 Klebsiella NZ_CP017480 2 Klebsiella Klebsiella variicola 2 Klebsiella Klebsiella pneumoniae JM45 1 Klebsiella Klebsiella pneumoniae subsp. pneumoniae HS11286 1 Klebsiella Klebsiella pneumoniae 30660/NJST258_1 1 Klebsiella Klebsiella pneumoniae subsp. pneumoniae # 26 reads uniquely mapped to Kocuria (multi-hits among diff. species in Kocuria allowed) 8 Kocuria Kocuria palustris 5 Kocuria Kocuria sp. ZOR0020 5 Kocuria Kocuria rhizophila DC2201 3 Kocuria Kocuria polaris 3 Kocuria Kocuria kristinae 1 Kocuria Kocuria flava 1 Kocuria Kocuria marina # 18 reads uniquely mapped to Kytococcus (multi-hits among diff. species in Kytococcus allowed) 18 Kytococcus Kytococcus sedentarius DSM 20547 # 273 reads uniquely mapped to Lactobacillus (multi-hits among diff. species in Lactobacillus allowed) 97 Lactobacillus Lactobacillus curvatus 81 Lactobacillus Lactobacillus sakei subsp. sakei 23K 39 Lactobacillus Lactobacillus vaginalis DSM 5837 = ATCC 49540 9 Lactobacillus Lactobacillus plantarum 6 Lactobacillus Lactobacillus crispatus ST1 4 Lactobacillus Lactobacillus backii 4 Lactobacillus Lactobacillus xiangfangensis 2 Lactobacillus Lactobacillus selangorensis 2 Lactobacillus Lactobacillus amylolyticus DSM 11664 2 Lactobacillus Lactobacillus plantarum subsp. plantarum P-8 2 Lactobacillus Lactobacillus paracollinoides 2 Lactobacillus Lactobacillus fermentum 1 Lactobacillus Lactobacillus reuteri 1 Lactobacillus Lactobacillus oligofermentans DSM 15707 = LMG 22743 1 Lactobacillus Lactobacillus plantarum subsp. plantarum 1 Lactobacillus Lactobacillus suebicus DSM 5007 = KCTC 3549 1 Lactobacillus Lactobacillus brevis ATCC 367 1 Lactobacillus Lactobacillus lindneri 1 Lactobacillus Lactobacillus brevis KB290 1 Lactobacillus Lactobacillus curieae 1 Lactobacillus Lactobacillus mindensis DSM 14500 1 Lactobacillus Lactobacillus graminis DSM 20719 1 Lactobacillus Lactobacillus floricola DSM 23037 = JCM 16512 1 Lactobacillus Lactobacillus bifermentans DSM 20003 1 Lactobacillus Lactobacillus rhamnosus ATCC 8530 1 Lactobacillus Lactobacillus paracasei ATCC 334 1 Lactobacillus Lactobacillus vini DSM 20605 1 Lactobacillus Lactobacillus antri DSM 16041 1 Lactobacillus Lactobacillus malefermentans DSM 5705 = KCTC 3548 1 Lactobacillus Lactobacillus fermentum 3872 1 Lactobacillus Lactobacillus kefiranofaciens ZW3 1 Lactobacillus Lactobacillus diolivorans DSM 14421 1 Lactobacillus Lactobacillus nagelii DSM 13675 1 Lactobacillus Lactobacillus fuchuensis DSM 14340 = JCM 11249 1 Lactobacillus Lactobacillus rhamnosus GG # 24 reads uniquely mapped to Lactococcus (multi-hits among diff. species in Lactococcus allowed) 4 Lactococcus Lactococcus lactis subsp. cremoris UC509.9 4 Lactococcus Lactococcus piscium MKFS47 3 Lactococcus Lactococcus lactis subsp. lactis KLDS 4.0325 2 Lactococcus Lactococcus garvieae ATCC 49156 2 Lactococcus Lactococcus lactis subsp. lactis CV56 1 Lactococcus Lactococcus lactis subsp. lactis Il1403 1 Lactococcus Lactococcus lactis subsp. cremoris SK11 1 Lactococcus Lactococcus lactis subsp. cremoris MG1363 1 Lactococcus Lactococcus lactis 1 Lactococcus Lactococcus lactis subsp. cremoris A76 1 Lactococcus Lactococcus lactis subsp. cremoris NZ9000 1 Lactococcus Lactococcus garvieae Lg2 1 Lactococcus Lactococcus lactis subsp. cremoris KW2 1 Lactococcus Lactococcus lactis subsp. lactis NCDO 2118 # 22 reads uniquely mapped to Leuconostoc (multi-hits among diff. species in Leuconostoc allowed) 17 Leuconostoc Leuconostoc carnosum JB16 3 Leuconostoc Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 Leuconostoc Leuconostoc mesenteroides subsp. dextranicum 1 Leuconostoc Leuconostoc mesenteroides subsp. mesenteroides J18 # 8 reads uniquely mapped to Limnohabitans (multi-hits among diff. species in Limnohabitans allowed) 4 Limnohabitans Limnohabitans sp. 63ED37-2 2 Limnohabitans Limnohabitans sp. 103DPR2 2 Limnohabitans Limnohabitans planktonicus II-D5 # 19 reads uniquely mapped to Marinomonas (multi-hits among diff. species in Marinomonas allowed) 6 Marinomonas Marinomonas posidonica IVIA-Po-181 5 Marinomonas Marinomonas profundimaris 4 Marinomonas Marinomonas sp. MED121 3 Marinomonas Marinomonas sp. MWYL1 1 Marinomonas Marinomonas mediterranea MMB-1 # 13 reads uniquely mapped to Massilia (multi-hits among diff. species in Massilia allowed) 7 Massilia Massilia timonae 2 Massilia Massilia putida 1 Massilia Massilia sp. NR 4-1 1 Massilia Massilia sp. 9096 1 Massilia Massilia alkalitolerans DSM 17462 1 Massilia Massilia sp. WG5 # 7 reads uniquely mapped to Meiothermus (multi-hits among diff. species in Meiothermus allowed) 3 Meiothermus Meiothermus silvanus DSM 9946 2 Meiothermus Meiothermus chliarophilus DSM 9957 1 Meiothermus Meiothermus timidus DSM 17022 1 Meiothermus Meiothermus rufus DSM 22234 # 9069 reads uniquely mapped to Mesorhizobium (multi-hits among diff. species in Mesorhizobium allowed) 4558 Mesorhizobium Mesorhizobium sp. ORS3324 4496 Mesorhizobium Mesorhizobium plurifarium 4 Mesorhizobium Mesorhizobium sp. B7 4 Mesorhizobium Mesorhizobium sp. Root157 2 Mesorhizobium Mesorhizobium opportunistum WSM2075 2 Mesorhizobium Mesorhizobium loti MAFF303099 2 Mesorhizobium Mesorhizobium loti NZP2037 1 Mesorhizobium Mesorhizobium australicum WSM2073 # 586 reads uniquely mapped to Methylobacterium (multi-hits among diff. species in Methylobacterium allowed) 451 Methylobacterium Methylobacterium phyllosphaerae 37 Methylobacterium Methylobacterium sp. C1 26 Methylobacterium Methylobacterium aquaticum 22 Methylobacterium Methylobacterium radiotolerans JCM 2831 11 Methylobacterium Methylobacterium extorquens AM1 10 Methylobacterium Methylobacterium sp. ARG-1 6 Methylobacterium Methylobacterium populi BJ001 5 Methylobacterium Methylobacterium populi 4 Methylobacterium Methylobacterium extorquens 3 Methylobacterium Methylobacterium sp. ZNC0032 2 Methylobacterium Methylobacterium extorquens PA1 2 Methylobacterium Methylobacterium sp. Leaf99 2 Methylobacterium Methylobacterium nodulans ORS 2060 1 Methylobacterium Methylobacterium sp. AMS5 1 Methylobacterium Methylobacterium extorquens CM4 1 Methylobacterium Methylobacterium sp. 4-46 1 Methylobacterium Methylobacterium sp. Leaf399 1 Methylobacterium Methylobacterium extorquens DM4 # 14 reads uniquely mapped to Methylopila (multi-hits among diff. species in Methylopila allowed) 10 Methylopila Methylopila sp. M107 4 Methylopila Methylopila sp. 73B # 12 reads uniquely mapped to Methylotenera (multi-hits among diff. species in Methylotenera allowed) 8 Methylotenera Methylotenera versatilis 79 2 Methylotenera Methylotenera sp. 1P/1 2 Methylotenera Methylotenera versatilis 301 # 9167 reads uniquely mapped to Microbacterium (multi-hits among diff. species in Microbacterium allowed) 9148 Microbacterium Microbacterium sp. C448 2 Microbacterium Microbacterium gubbeenense DSM 15944 2 Microbacterium Microbacterium sp. CF335 2 Microbacterium Microbacterium foliorum 2 Microbacterium Microbacterium sp. BH-3-3-3 1 Microbacterium Microbacterium gorillae 1 Microbacterium Microbacterium sp. Root61 1 Microbacterium Microbacterium luticocti DSM 19459 1 Microbacterium Microbacterium mangrovi 1 Microbacterium Microbacterium hominis NBRC 15708 1 Microbacterium Microbacterium maritypicum MF109 1 Microbacterium Microbacterium sp. No. 7 1 Microbacterium Microbacterium sp. 1.5R 1 Microbacterium Microbacterium profundi 1 Microbacterium Microbacterium oleivorans NBRC 103075 1 Microbacterium Microbacterium sp. Root53 # 132 reads uniquely mapped to Micrococcus (multi-hits among diff. species in Micrococcus allowed) 132 Micrococcus Micrococcus luteus NCTC 2665 # 20 reads uniquely mapped to Mobilicoccus (multi-hits among diff. species in Mobilicoccus allowed) 14 Mobilicoccus Mobilicoccus pelagius NBRC 104925 6 Mobilicoccus Mobilicoccus sp. SIT2 # 17 reads uniquely mapped to Moraxella (multi-hits among diff. species in Moraxella allowed) 8 Moraxella Moraxella osloensis 5 Moraxella Moraxella bovoculi 2 Moraxella Moraxella macacae 0408225 1 Moraxella Moraxella catarrhalis BBH18 1 Moraxella Moraxella catarrhalis # 4 reads uniquely mapped to Mucilaginibacter (multi-hits among diff. species in Mucilaginibacter allowed) 3 Mucilaginibacter Mucilaginibacter sp. PAMC 26640 1 Mucilaginibacter Mucilaginibacter paludis DSM 18603 # 9197 reads uniquely mapped to Mycobacterium (multi-hits among diff. species in Mycobacterium allowed) 4678 Mycobacterium Mycobacterium cosmeticum 4493 Mycobacterium Mycobacterium aurum 8 Mycobacterium Mycobacterium parascrofulaceum ATCC BAA-614 2 Mycobacterium Mycobacterium gilvum PYR-GCK 2 Mycobacterium Mycobacterium heckeshornense 1 Mycobacterium Mycobacterium genavense ATCC 51234 1 Mycobacterium Mycobacterium sp. MCS 1 Mycobacterium Mycobacterium immunogenum 1 Mycobacterium Mycobacterium sp. NRRL B-3805 1 Mycobacterium Mycobacterium marinum E11 1 Mycobacterium Mycobacterium smegmatis 1 Mycobacterium Mycobacterium sp. Root265 1 Mycobacterium Mycobacterium abscessus subsp. bolletii 1 Mycobacterium Mycobacterium abscessus subsp. bolletii 103 1 Mycobacterium Mycobacterium xenopi RIVM700367 1 Mycobacterium Mycobacterium brisbanense 1 Mycobacterium Mycobacterium smegmatis str. MC2 155 1 Mycobacterium Mycobacterium fortuitum 1 Mycobacterium Mycobacterium sp. WY10 # 24 reads uniquely mapped to Nakamurella (multi-hits among diff. species in Nakamurella allowed) 14 Nakamurella Nakamurella lactea DSM 19367 10 Nakamurella Nakamurella multipartita DSM 44233 # 182 reads uniquely mapped to Neisseria (multi-hits among diff. species in Neisseria allowed) 157 Neisseria Neisseria arctica 6 Neisseria Neisseria meningitidis 6 Neisseria Neisseria cinerea ATCC 14685 4 Neisseria Neisseria shayeganii 871 3 Neisseria Neisseria meningitidis MC58 2 Neisseria Neisseria mucosa C102 1 Neisseria Neisseria elongata subsp. glycolytica ATCC 29315 1 Neisseria Neisseria sicca 1 Neisseria Neisseria bacilliformis ATCC BAA-1200 1 Neisseria Neisseria gonorrhoeae # 6 reads uniquely mapped to Nevskia (multi-hits among diff. species in Nevskia allowed) 4 Nevskia Nevskia ramosa DSM 11499 2 Nevskia Nevskia soli DSM 19509 # 6162 reads uniquely mapped to Nocardia (multi-hits among diff. species in Nocardia allowed) 2150 Nocardia Nocardia brevicatena NBRC 12119 1971 Nocardia Nocardia pneumoniae NBRC 100136 679 Nocardia Nocardia jiangxiensis NBRC 101359 651 Nocardia Nocardia niigatensis NBRC 100131 607 Nocardia Nocardia veterana NBRC 100344 85 Nocardia Nocardia otitidiscaviarum NBRC 14405 7 Nocardia Nocardia seriolae 2 Nocardia Nocardia sp. 348MFTsu5.1 2 Nocardia Nocardia farcinica 2 Nocardia Nocardia asteroides NBRC 15531 1 Nocardia Nocardia higoensis NBRC 100133 1 Nocardia Nocardia niwae NBRC 108934 = DSM 45340 1 Nocardia Nocardia nova SH22a 1 Nocardia Nocardia tenerifensis NBRC 101015 1 Nocardia Nocardia sp. BMG51109 1 Nocardia Nocardia thailandica NBRC 100428 # 25 reads uniquely mapped to Nocardioides (multi-hits among diff. species in Nocardioides allowed) 4 Nocardioides Nocardioides sp. Root151 4 Nocardioides Nocardioides sp. URHA0020 3 Nocardioides Nocardioides sp. Soil797 3 Nocardioides Nocardioides luteus 2 Nocardioides Nocardioides sp. Iso805N 2 Nocardioides Nocardioides sp. URHA0032 1 Nocardioides Nocardioides sp. JS614 1 Nocardioides Nocardioides sp. Root190 1 Nocardioides Nocardioides sp. Root682 1 Nocardioides Nocardioides sp. Soil805 1 Nocardioides Nocardioides halotolerans DSM 19273 1 Nocardioides Nocardioides sp. CF8 1 Nocardioides Nocardioides sp. Root79 # 36 reads uniquely mapped to Novosphingobium (multi-hits among diff. species in Novosphingobium allowed) 17 Novosphingobium Novosphingobium sp. Leaf2 4 Novosphingobium Novosphingobium barchaimii LL02 2 Novosphingobium Novosphingobium lindaniclasticum LE124 2 Novosphingobium Novosphingobium sp. AAP93 2 Novosphingobium Novosphingobium pentaromativorans US6-1 2 Novosphingobium Novosphingobium acidiphilum DSM 19966 2 Novosphingobium Novosphingobium resinovorum 1 Novosphingobium Novosphingobium capsulatum NBRC 12533 1 Novosphingobium Novosphingobium barchaimii 1 Novosphingobium Novosphingobium sp. MBES04 1 Novosphingobium Novosphingobium sp. AAP83 1 Novosphingobium Novosphingobium malaysiense # 1 reads uniquely mapped to Oribacterium (multi-hits among diff. species in Oribacterium allowed) 1 Oribacterium Oribacterium sinus F0268 # 9088 reads uniquely mapped to Paenibacillus (multi-hits among diff. species in Paenibacillus allowed) 9078 Paenibacillus Paenibacillus sp. FF9 2 Paenibacillus Paenibacillus senegalensis JC66 1 Paenibacillus Paenibacillus polymyxa 1 Paenibacillus Paenibacillus sp. Y412MC10 1 Paenibacillus Paenibacillus sp. LPB0068 1 Paenibacillus Paenibacillus larvae subsp. pulvifaciens 1 Paenibacillus Paenibacillus beijingensis 1 Paenibacillus Paenibacillus mucilaginosus 3016 1 Paenibacillus Paenibacillus mucilaginosus K02 1 Paenibacillus Paenibacillus mucilaginosus KNP414 # 12 reads uniquely mapped to Pandoraea (multi-hits among diff. species in Pandoraea allowed) 4 Pandoraea Pandoraea pnomenusa 3 Pandoraea Pandoraea pulmonicola 1 Pandoraea Pandoraea norimbergensis 1 Pandoraea Pandoraea apista 1 Pandoraea Pandoraea pnomenusa 3kgm 1 Pandoraea Pandoraea faecigallinarum 1 Pandoraea Pandoraea thiooxydans # 25 reads uniquely mapped to Paraburkholderia (multi-hits among diff. species in Paraburkholderia allowed) 13 Paraburkholderia Paraburkholderia fungorum 3 Paraburkholderia Paraburkholderia caribensis 3 Paraburkholderia Paraburkholderia rhizoxinica HKI 454 1 Paraburkholderia Paraburkholderia andropogonis 1 Paraburkholderia Paraburkholderia acidipaludis NBRC 101816 1 Paraburkholderia Paraburkholderia sacchari 1 Paraburkholderia Paraburkholderia sprentiae WSM5005 1 Paraburkholderia Paraburkholderia xenovorans LB400 1 Paraburkholderia Paraburkholderia phenoliruptrix BR3459a # 36 reads uniquely mapped to Paracoccus (multi-hits among diff. species in Paracoccus allowed) 18 Paracoccus Paracoccus sp. 228 6 Paracoccus Paracoccus yeei ATCC BAA-599 3 Paracoccus Paracoccus yeei 2 Paracoccus Paracoccus sp. TRP 2 Paracoccus Paracoccus halophilus 1 Paracoccus Paracoccus aminovorans 1 Paracoccus Paracoccus aminophilus JCM 7686 1 Paracoccus Paracoccus versutus 1 Paracoccus Paracoccus denitrificans PD1222 1 Paracoccus Paracoccus zeaxanthinifaciens ATCC 21588 # 6 reads uniquely mapped to Paucibacter (multi-hits among diff. species in Paucibacter allowed) 6 Paucibacter Paucibacter sp. KCTC 42545 # 6 reads uniquely mapped to Peptoniphilus (multi-hits among diff. species in Peptoniphilus allowed) 1 Peptoniphilus Peptoniphilus timonensis JC401 1 Peptoniphilus Peptoniphilus sp. BV3C26 1 Peptoniphilus Peptoniphilus rhinitidis 1-13 1 Peptoniphilus Peptoniphilus sp. ChDC B134 1 Peptoniphilus Peptoniphilus sp. oral taxon 375 str. F0436 1 Peptoniphilus Peptoniphilus obesi ph1 # 13 reads uniquely mapped to Photobacterium (multi-hits among diff. species in Photobacterium allowed) 3 Photobacterium Photobacterium profundum SS9 2 Photobacterium Photobacterium gaetbulicola Gung47 2 Photobacterium Photobacterium damselae subsp. damselae CIP 102761 2 Photobacterium Photobacterium kishitanii 1 Photobacterium Photobacterium leiognathi 1 Photobacterium Photobacterium swingsii 1 Photobacterium Photobacterium aquae 1 Photobacterium Photobacterium sp. JCM 19050 # 2 reads uniquely mapped to Porphyromonas (multi-hits among diff. species in Porphyromonas allowed) 1 Porphyromonas Porphyromonas cangingivalis JCM 15983 1 Porphyromonas Porphyromonas endodontalis ATCC 35406 # 58 reads uniquely mapped to Prevotella (multi-hits among diff. species in Prevotella allowed) 21 Prevotella Prevotella nigrescens ATCC 33563 18 Prevotella Prevotella pallens ATCC 700821 10 Prevotella Prevotella sp. S7 MS 2 4 Prevotella Prevotella copri DSM 18205 3 Prevotella Prevotella melaninogenica ATCC 25845 1 Prevotella Prevotella histicola JCM 15637 = DNF00424 1 Prevotella Prevotella denticola F0289 # 9105 reads uniquely mapped to Pseudomonas (multi-hits among diff. species in Pseudomonas allowed) 9067 Pseudomonas Pseudomonas pelagia CL-AP6 6 Pseudomonas Pseudomonas fluorescens 2 Pseudomonas Pseudomonas chlororaphis 2 Pseudomonas Pseudomonas stutzeri DSM 4166 2 Pseudomonas Pseudomonas azotoformans 2 Pseudomonas Pseudomonas aeruginosa 2 Pseudomonas Pseudomonas fluorescens PICF7 1 Pseudomonas Pseudomonas pseudoalcaligenes CECT 5344 1 Pseudomonas Pseudomonas putida W619 1 Pseudomonas Pseudomonas sp. CC6-YY-74 1 Pseudomonas Pseudomonas pseudoalcaligenes 1 Pseudomonas Pseudomonas sp. CCOS 191 1 Pseudomonas Pseudomonas sp. GR 6-02 1 Pseudomonas Pseudomonas saudiphocaensis 1 Pseudomonas Pseudomonas syringae UMAF0158 1 Pseudomonas Pseudomonas stutzeri A1501 1 Pseudomonas Pseudomonas alcaliphila JAB1 1 Pseudomonas Pseudomonas mosselii SJ10 1 Pseudomonas Pseudomonas frederiksbergensis 1 Pseudomonas Pseudomonas monteilii 1 Pseudomonas Pseudomonas alcaligenes 1 Pseudomonas Pseudomonas psychrotolerans 1 Pseudomonas Pseudomonas sp. DR 5-09 1 Pseudomonas Pseudomonas oryzihabitans 1 Pseudomonas Pseudomonas sp. FGI182 1 Pseudomonas Pseudomonas aeruginosa UCBPP-PA14 1 Pseudomonas Pseudomonas rhizosphaerae 1 Pseudomonas Pseudomonas taeanensis MS-3 1 Pseudomonas Pseudomonas entomophila L48 # 12 reads uniquely mapped to Pseudorhodobacter (multi-hits among diff. species in Pseudorhodobacter allowed) 7 Pseudorhodobacter Pseudorhodobacter ferrugineus DSM 5888 3 Pseudorhodobacter Pseudorhodobacter aquimaris 2 Pseudorhodobacter Pseudorhodobacter psychrotolerans # 13 reads uniquely mapped to Pusillimonas (multi-hits among diff. species in Pusillimonas allowed) 8 Pusillimonas Pusillimonas sp. T7-7 5 Pusillimonas Pusillimonas noertemannii BS8 # 45 reads uniquely mapped to Ralstonia (multi-hits among diff. species in Ralstonia allowed) 14 Ralstonia Ralstonia pickettii 12J 8 Ralstonia Ralstonia insidiosa 6 Ralstonia Ralstonia pickettii 12D 6 Ralstonia Ralstonia mannitolilytica 5 Ralstonia Ralstonia sp. PBA 4 Ralstonia Ralstonia solanacearum 1 Ralstonia Ralstonia solanacearum FJAT-1458 1 Ralstonia Ralstonia solanacearum PSI07 # 24 reads uniquely mapped to Raphidiopsis (multi-hits among diff. species in Raphidiopsis allowed) 24 Raphidiopsis Raphidiopsis brookii D9 # 15 reads uniquely mapped to Rheinheimera (multi-hits among diff. species in Rheinheimera allowed) 6 Rheinheimera Rheinheimera sp. KL1 4 Rheinheimera Rheinheimera baltica DSM 14885 4 Rheinheimera Rheinheimera texasensis DSM 17496 1 Rheinheimera Rheinheimera perlucida DSM 18276 # 13 reads uniquely mapped to Rhodobacter (multi-hits among diff. species in Rhodobacter allowed) 3 Rhodobacter Candidatus Rhodobacter lobularis 2 Rhodobacter Rhodobacter sphaeroides 2 Rhodobacter Rhodobacter sp. LPB0142 1 Rhodobacter Rhodobacter sphaeroides KD131 1 Rhodobacter Rhodobacter sp. SW2 1 Rhodobacter Rhodobacter sphaeroides ATCC 17025 1 Rhodobacter Rhodobacter capsulatus SB 1003 1 Rhodobacter Rhodobacter sphaeroides ATCC 17029 1 Rhodobacter Rhodobacter sphaeroides 2.4.1 # 19 reads uniquely mapped to Rhodococcus (multi-hits among diff. species in Rhodococcus allowed) 2 Rhodococcus Rhodococcus pyridinivorans SB3094 2 Rhodococcus Rhodococcus hoagii 103S 2 Rhodococcus Rhodococcus sp. PBTS 1 2 Rhodococcus Rhodococcus fascians D188 2 Rhodococcus Rhodococcus opacus B4 1 Rhodococcus Rhodococcus opacus PD630 1 Rhodococcus Rhodococcus sp. MTM3W5.2 1 Rhodococcus Rhodococcus opacus 1 Rhodococcus Rhodococcus triatomae BKS 15-14 1 Rhodococcus Rhodococcus sp. 2G 1 Rhodococcus Rhodococcus sp. WB1 1 Rhodococcus Rhodococcus sp. PBTS 2 1 Rhodococcus Rhodococcus sp. YL-1 1 Rhodococcus Rhodococcus erythropolis CCM2595 # 6 reads uniquely mapped to Rickettsiella (multi-hits among diff. species in Rickettsiella allowed) 6 Rickettsiella Rickettsiella grylli # 19 reads uniquely mapped to Roseomonas (multi-hits among diff. species in Roseomonas allowed) 16 Roseomonas Roseomonas gilardii 3 Roseomonas Roseomonas cervicalis ATCC 49957 # 30 reads uniquely mapped to Rothia (multi-hits among diff. species in Rothia allowed) 10 Rothia Rothia mucilaginosa DY-18 10 Rothia Rothia dentocariosa ATCC 17931 8 Rothia Rothia mucilaginosa 2 Rothia Rothia dentocariosa # 7 reads uniquely mapped to Rubrobacter (multi-hits among diff. species in Rubrobacter allowed) 5 Rubrobacter Rubrobacter xylanophilus DSM 9941 1 Rubrobacter Rubrobacter radiotolerans 1 Rubrobacter Rubrobacter aplysinae # 19 reads uniquely mapped to Saccharomonospora (multi-hits among diff. species in Saccharomonospora allowed) 6 Saccharomonospora Saccharomonospora viridis DSM 43017 4 Saccharomonospora Saccharomonospora azurea NA-128 3 Saccharomonospora Saccharomonospora xinjiangensis XJ-54 2 Saccharomonospora Saccharomonospora glauca K62 1 Saccharomonospora Saccharomonospora paurometabolica YIM 90007 1 Saccharomonospora Saccharomonospora marina XMU15 1 Saccharomonospora Saccharomonospora cyanea NA-134 1 Saccharomonospora Saccharomonospora saliphila YIM 90502 # 6 reads uniquely mapped to Selenomonas (multi-hits among diff. species in Selenomonas allowed) 3 Selenomonas Selenomonas ruminantium AB3002 1 Selenomonas Selenomonas sputigena ATCC 35185 1 Selenomonas Selenomonas sp. oral taxon 920 1 Selenomonas Selenomonas sp. oral taxon 478 # 24 reads uniquely mapped to Shewanella (multi-hits among diff. species in Shewanella allowed) 8 Shewanella Shewanella benthica KT99 3 Shewanella Shewanella sp. ANA-3 2 Shewanella Shewanella baltica OS117 2 Shewanella Shewanella pealeana ATCC 700345 1 Shewanella Shewanella piezotolerans WP3 1 Shewanella Shewanella algae 1 Shewanella Shewanella baltica BA175 1 Shewanella Shewanella psychrophila 1 Shewanella Shewanella sp. MR-4 1 Shewanella Shewanella sp. W3-18-1 1 Shewanella Shewanella sediminis HAW-EB3 1 Shewanella Shewanella frigidimarina NCIMB 400 1 Shewanella Shewanella violacea DSS12 # 12 reads uniquely mapped to Shinella (multi-hits among diff. species in Shinella allowed) 12 Shinella Shinella sp. HZN7 # 19 reads uniquely mapped to Skermanella (multi-hits among diff. species in Skermanella allowed) 11 Skermanella Skermanella stibiiresistens SB22 8 Skermanella Skermanella aerolata KACC 11604 # 25 reads uniquely mapped to Sphingobium (multi-hits among diff. species in Sphingobium allowed) 5 Sphingobium Sphingobium sp. RAC03 3 Sphingobium Sphingobium baderi LL03 3 Sphingobium Sphingobium sp. MI1205 2 Sphingobium Sphingobium sp. EP60837 2 Sphingobium Sphingobium yanoikuyae ATCC 51230 2 Sphingobium Sphingobium chlorophenolicum L-1 2 Sphingobium Sphingobium baderi 2 Sphingobium Sphingobium sp. YBL2 1 Sphingobium Sphingobium ummariense RL-3 1 Sphingobium Sphingobium sp. C100 1 Sphingobium Sphingobium xenophagum NBRC 107872 1 Sphingobium Sphingobium sp. Leaf26 # 167 reads uniquely mapped to Sphingomonas (multi-hits among diff. species in Sphingomonas allowed) 45 Sphingomonas Sphingomonas sp. LK11 36 Sphingomonas Sphingomonas melonis TY 25 Sphingomonas Sphingomonas sp. NIC1 14 Sphingomonas Sphingomonas paucimobilis NBRC 13935 12 Sphingomonas Sphingomonas echinoides ATCC 14820 6 Sphingomonas Sphingomonas sp. Leaf33 4 Sphingomonas Sphingomonas sp. Leaf339 3 Sphingomonas Sphingomonas panacis 3 Sphingomonas Sphingomonas sp. MM-1 2 Sphingomonas Sphingomonas sp. WG 2 Sphingomonas Sphingomonas taxi 2 Sphingomonas Sphingomonas sanxanigenens DSM 19645 = NX02 2 Sphingomonas Sphingomonas sp. Ag1 2 Sphingomonas Sphingomonas sp. ERG5 2 Sphingomonas Sphingomonas koreensis 1 Sphingomonas Sphingomonas sp. URHD0057 1 Sphingomonas Sphingomonas sp. Leaf343 1 Sphingomonas Sphingomonas sp. Leaf34 1 Sphingomonas Sphingomonas haloaromaticamans 1 Sphingomonas Sphingomonas wittichii 1 Sphingomonas Sphingomonas sp. PR090111-T3T-6A 1 Sphingomonas Sphingomonas elodea ATCC 31461 # 21 reads uniquely mapped to Sphingopyxis (multi-hits among diff. species in Sphingopyxis allowed) 5 Sphingopyxis Sphingopyxis sp. LPB0140 4 Sphingopyxis Sphingopyxis alaskensis RB2256 3 Sphingopyxis Sphingopyxis granuli 2 Sphingopyxis Sphingopyxis sp. 113P3 2 Sphingopyxis Sphingopyxis sp. Root1497 2 Sphingopyxis Sphingopyxis baekryungensis DSM 16222 1 Sphingopyxis Sphingopyxis sp. QXT-31 1 Sphingopyxis Sphingopyxis sp. MWB1 1 Sphingopyxis Sphingopyxis macrogoltabida # 3 reads uniquely mapped to Spirosoma (multi-hits among diff. species in Spirosoma allowed) 2 Spirosoma Spirosoma rigui 1 Spirosoma Spirosoma aerolatum # 81 reads uniquely mapped to Staphylococcus (multi-hits among diff. species in Staphylococcus allowed) 15 Staphylococcus Staphylococcus epidermidis PM221 12 Staphylococcus Staphylococcus epidermidis 11 Staphylococcus Staphylococcus warneri SG1 8 Staphylococcus Staphylococcus capitis subsp. capitis 8 Staphylococcus Staphylococcus hominis subsp. hominis C80 5 Staphylococcus Staphylococcus epidermidis RP62A 5 Staphylococcus Staphylococcus epidermidis ATCC 12228 4 Staphylococcus Staphylococcus equorum 4 Staphylococcus Staphylococcus capitis 3 Staphylococcus Staphylococcus aureus 1 Staphylococcus Staphylococcus carnosus 1 Staphylococcus Staphylococcus pasteuri SP1 1 Staphylococcus Staphylococcus pettenkoferi VCU012 1 Staphylococcus Staphylococcus aureus subsp. aureus 1 Staphylococcus Staphylococcus cohnii subsp. cohnii 1 Staphylococcus Staphylococcus aureus subsp. aureus NCTC 8325 # 16 reads uniquely mapped to Stenotrophomonas (multi-hits among diff. species in Stenotrophomonas allowed) 3 Stenotrophomonas Stenotrophomonas acidaminiphila 3 Stenotrophomonas Stenotrophomonas maltophilia 2 Stenotrophomonas Stenotrophomonas panacihumi 2 Stenotrophomonas Stenotrophomonas rhizophila 2 Stenotrophomonas Stenotrophomonas sp. KCTC 12332 1 Stenotrophomonas Stenotrophomonas maltophilia JV3 1 Stenotrophomonas Stenotrophomonas maltophilia D457 1 Stenotrophomonas Stenotrophomonas daejeonensis 1 Stenotrophomonas Stenotrophomonas sp. LM091 # 76 reads uniquely mapped to Streptococcus (multi-hits among diff. species in Streptococcus allowed) 11 Streptococcus Streptococcus mitis 7 Streptococcus Streptococcus mitis B6 5 Streptococcus Streptococcus thermophilus 4 Streptococcus Streptococcus oralis 4 Streptococcus Streptococcus suis SC070731 3 Streptococcus Streptococcus pyogenes 3 Streptococcus Streptococcus oralis subsp. tigurinus AZ_3a 3 Streptococcus Streptococcus pseudopneumoniae IS7493 3 Streptococcus Streptococcus parasanguinis FW213 3 Streptococcus Streptococcus pneumoniae 2 Streptococcus Streptococcus oralis Uo5 2 Streptococcus Streptococcus thermophilus CNRZ1066 2 Streptococcus Streptococcus infantis ATCC 700779 2 Streptococcus Streptococcus gordonii 2 Streptococcus Streptococcus sp. oral taxon 431 1 Streptococcus Streptococcus thermophilus JIM 8232 1 Streptococcus Streptococcus pneumoniae Hungary19A-6 1 Streptococcus Streptococcus salivarius CCHSS3 1 Streptococcus Streptococcus parasanguinis ATCC 15912 1 Streptococcus Streptococcus pyogenes JRS4 1 Streptococcus Streptococcus ratti FA-1 = DSM 20564 1 Streptococcus Streptococcus gallolyticus 1 Streptococcus Streptococcus anginosus C1051 1 Streptococcus Streptococcus suis 1 Streptococcus Streptococcus sobrinus DSM 20742 = ATCC 33478 1 Streptococcus Streptococcus pneumoniae Taiwan19F-14 1 Streptococcus Streptococcus agalactiae A909 1 Streptococcus Streptococcus pyogenes MGAS2096 1 Streptococcus Streptococcus pneumoniae ST556 1 Streptococcus Streptococcus equi subsp. zooepidemicus MGCS10565 1 Streptococcus Streptococcus pneumoniae R6 1 Streptococcus Streptococcus pneumoniae SPN034183 1 Streptococcus Streptococcus pneumoniae D39 1 Streptococcus Streptococcus pneumoniae CGSP14 1 Streptococcus Streptococcus pneumoniae SPNA45 # 31 reads uniquely mapped to Streptomyces (multi-hits among diff. species in Streptomyces allowed) 6 Streptomyces Streptomyces roseoverticillatus 4 Streptomyces Streptomyces xiamenensis 1 Streptomyces Streptomyces lydicus 1 Streptomyces Streptomyces sp. CNQ-509 1 Streptomyces Streptomyces sp. TAA204 1 Streptomyces Streptomyces hygroscopicus 1 Streptomyces Streptomyces roseochromogenus subsp. oscitans DS 12.976 1 Streptomyces Streptomyces ossamyceticus 1 Streptomyces Streptomyces sp. TN58 1 Streptomyces Streptomyces sp. CdTB01 1 Streptomyces Streptomyces sp. CCM_MD2014 1 Streptomyces Streptomyces viridifaciens 1 Streptomyces Streptomyces griseochromogenes 1 Streptomyces Streptomyces albus J1074 1 Streptomyces Streptomyces sp. 3211 1 Streptomyces Streptomyces globisporus C-1027 1 Streptomyces Streptomyces sp. 150FB 1 Streptomyces Streptomyces venezuelae ATCC 10712 1 Streptomyces Streptomyces coelicolor A3(2) 1 Streptomyces Streptomyces olivaceus 1 Streptomyces Streptomyces scabrisporus DSM 41855 1 Streptomyces Streptomyces sp. MJM8645 1 Streptomyces Streptomyces lividans TK24 # 4 reads uniquely mapped to Thermorudis (multi-hits among diff. species in Thermorudis allowed) 4 Thermorudis Thermorudis peleae # 7 reads uniquely mapped to Thermus (multi-hits among diff. species in Thermus allowed) 3 Thermus Thermus thermophilus SG0.5JP17-16 2 Thermus Thermus scotoductus SA-01 1 Thermus Thermus amyloliquefaciens 1 Thermus Thermus filiformis # 10 reads uniquely mapped to Turicella (multi-hits among diff. species in Turicella allowed) 10 Turicella Turicella otitidis ATCC 51513 # 72 reads uniquely mapped to Tyzzerella (multi-hits among diff. species in Tyzzerella allowed) 67 Tyzzerella Tyzzerella nexilis DSM 1787 3 Tyzzerella [Clostridium] lactatifermentans DSM 14214 2 Tyzzerella [Clostridium] propionicum DSM 1682 # 9 reads uniquely mapped to Variovorax (multi-hits among diff. species in Variovorax allowed) 4 Variovorax Variovorax sp. PAMC 28711 2 Variovorax Variovorax paradoxus EPS 2 Variovorax Variovorax sp. URHB0020 1 Variovorax Variovorax paradoxus S110 # 12 reads uniquely mapped to Veillonella (multi-hits among diff. species in Veillonella allowed) 5 Veillonella Veillonella parvula 4 Veillonella Veillonella parvula DSM 2008 2 Veillonella Veillonella sp. oral taxon 780 str. F0422 1 Veillonella Veillonella seminalis ACS-216-V-Col6b # 8 reads uniquely mapped to Vogesella (multi-hits among diff. species in Vogesella allowed) 8 Vogesella Vogesella sp. EB # 15 reads uniquely mapped to Xanthomonas (multi-hits among diff. species in Xanthomonas allowed) 5 Xanthomonas Xanthomonas oryzae pv. oryzae 3 Xanthomonas Xanthomonas perforans 2 Xanthomonas Xanthomonas campestris pv. campestris str. 8004 1 Xanthomonas Xanthomonas citri subsp. citri 1 Xanthomonas Xanthomonas oryzae pv. oryzicola 1 Xanthomonas Xanthomonas gardneri 1 Xanthomonas Xanthomonas campestris pv. raphani 756C 1 Xanthomonas Xanthomonas fragariae